Detailed information    

insolico Bioinformatically predicted

Overview

Name   treR   Type   Regulator
Locus tag   FDP16_RS03105 Genome accession   NZ_CP040798
Coordinates   610760..611473 (-) Length   237 a.a.
NCBI ID   WP_176798534.1    Uniprot ID   -
Organism   Streptococcus sanguinis strain CGMH058     
Function   regulate expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 605760..616473
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FDP16_RS03075 (FDP16_03185) - 606199..606807 (+) 609 WP_176798529.1 hypothetical protein -
  FDP16_RS03080 (FDP16_03190) - 606928..607536 (+) 609 WP_176798530.1 hypothetical protein -
  FDP16_RS03085 (FDP16_03195) - 607581..608189 (+) 609 WP_176798531.1 hypothetical protein -
  FDP16_RS03090 (FDP16_03200) - 608180..609694 (+) 1515 WP_176798532.1 hypothetical protein -
  FDP16_RS03095 (FDP16_03205) - 609703..609996 (+) 294 WP_161542820.1 hypothetical protein -
  FDP16_RS03100 (FDP16_03210) - 610005..610346 (+) 342 WP_256254397.1 hypothetical protein -
  FDP16_RS03105 (FDP16_03215) treR 610760..611473 (-) 714 WP_176798534.1 trehalose operon repressor Regulator
  FDP16_RS03110 (FDP16_03220) treP 611662..613659 (+) 1998 WP_176798535.1 PTS system trehalose-specific EIIBC component -
  FDP16_RS03115 (FDP16_03225) treC 613731..615362 (+) 1632 WP_176798536.1 alpha,alpha-phosphotrehalase -

Sequence

Protein


Download         Length: 237 a.a.        Molecular weight: 27804.78 Da        Isoelectric Point: 8.9389

>NTDB_id=367212 FDP16_RS03105 WP_176798534.1 610760..611473(-) (treR) [Streptococcus sanguinis strain CGMH058]
MKKYKQLFKQIEKDILDERYAVGDFLPSEHQLTEDYQVSRDTVRKALALLQEEGLIEKVRGQGSKVIKHEQFDFPVSKLT
SYQEVVKQNNMQSKTNVVSLEKITVDQKLSDITGFPPYRLVWRIVRQRVVDQIASVLDIDYLDKGIVPHLTREIAEQSIY
AYLENDLKLNIAYAKKEFTIDHANDRDKILMDLGKDQQVVSVKSQVYLADGRQFQYTESRHKLDKFRFVDFAKRQKE

Nucleotide


Download         Length: 714 bp        

>NTDB_id=367212 FDP16_RS03105 WP_176798534.1 610760..611473(-) (treR) [Streptococcus sanguinis strain CGMH058]
ATGAAGAAATACAAACAATTATTCAAACAGATTGAGAAAGATATTTTAGACGAGCGTTATGCTGTCGGAGACTTCTTGCC
CAGCGAACATCAGCTGACAGAAGACTATCAGGTCAGCCGCGACACAGTCCGCAAGGCTCTGGCCCTGCTGCAGGAAGAAG
GATTGATTGAAAAAGTCCGCGGACAAGGTTCCAAAGTCATCAAGCATGAACAGTTTGACTTTCCTGTGTCTAAGCTGACC
AGCTATCAAGAAGTAGTCAAGCAGAATAATATGCAGTCCAAAACCAATGTTGTCAGCTTGGAAAAGATTACCGTAGATCA
GAAACTATCCGACATCACTGGCTTCCCTCCCTACCGACTGGTTTGGCGAATCGTCCGTCAACGCGTTGTAGACCAAATCG
CTTCGGTCTTAGATATTGACTATTTAGACAAGGGTATCGTCCCCCACTTGACAAGGGAAATCGCTGAGCAGTCCATTTAT
GCCTATTTGGAAAATGACTTAAAACTCAACATTGCCTATGCCAAGAAGGAATTTACCATCGACCACGCCAATGACCGAGA
CAAGATTCTCATGGACCTAGGCAAGGATCAGCAGGTCGTCTCTGTCAAGTCTCAGGTCTATCTGGCAGACGGCCGCCAGT
TTCAATATACCGAGAGCCGTCACAAGCTAGACAAATTTCGCTTTGTGGATTTTGCTAAGCGTCAGAAAGAATAA

Domains

Predicted by InterproScan.

UTRA domain (UTRA)

(90-227)

Bacterial regulatory proteins, gntR family (GntR)

(3-66)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  treR Streptococcus mutans UA159

60.338

100

0.603

Multiple sequence alignment