Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   FDP16_RS01115 Genome accession   NZ_CP040798
Coordinates   207736..209103 (+) Length   455 a.a.
NCBI ID   WP_176799751.1    Uniprot ID   -
Organism   Streptococcus sanguinis strain CGMH058     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 202736..214103
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FDP16_RS12015 - 202760..203485 (+) 726 Protein_194 ABC transporter ATP-binding protein -
  FDP16_RS12020 rcrQ 203624..204412 (+) 789 WP_371278048.1 ABC transporter ATP-binding protein Regulator
  FDP16_RS01090 (FDP16_01125) - 204595..205284 (+) 690 WP_002907876.1 gamma-glutamyl-gamma-aminobutyrate hydrolase family protein -
  FDP16_RS01095 (FDP16_01135) - 205550..205999 (+) 450 WP_176798261.1 8-oxo-dGTP diphosphatase -
  FDP16_RS01100 (FDP16_01145) - 206085..206528 (+) 444 WP_176798262.1 dUTP diphosphatase -
  FDP16_RS01105 (FDP16_01150) - 206530..207045 (+) 516 WP_176798263.1 histidine phosphatase family protein -
  FDP16_RS01110 (FDP16_01155) - 207098..207730 (+) 633 WP_176798264.1 methyltransferase domain-containing protein -
  FDP16_RS01115 (FDP16_01160) radA 207736..209103 (+) 1368 WP_176799751.1 DNA repair protein RadA Machinery gene
  FDP16_RS01120 (FDP16_01165) - 209221..209937 (+) 717 WP_176798265.1 TIGR00266 family protein -
  FDP16_RS01125 (FDP16_01170) - 210052..210747 (+) 696 WP_176798266.1 TIGR00266 family protein -
  FDP16_RS01130 (FDP16_01175) - 210896..211393 (+) 498 WP_176798267.1 carbonic anhydrase -
  FDP16_RS01135 (FDP16_01180) - 211491..212357 (+) 867 WP_176798268.1 ABC transporter permease -
  FDP16_RS01140 (FDP16_01185) - 212354..213112 (+) 759 WP_176798269.1 ABC transporter ATP-binding protein -

Sequence

Protein


Download         Length: 455 a.a.        Molecular weight: 49788.17 Da        Isoelectric Point: 5.7873

>NTDB_id=367196 FDP16_RS01115 WP_176799751.1 207736..209103(+) (radA) [Streptococcus sanguinis strain CGMH058]
MTIAKKKTTFVCQNCEYHSPKYLGRCPNCGSWSSFVEEVEAAEVKHARVSLTGEKTRPMKLAEVTSIDVNRIKTEMDEFN
RVLGGGVVPGSLVLIGGDPGIGKSTLLLQVSTQLSHQGTVLYVSGEESAEQIKLRAERLGDIDSEFYLYAETNMQNIRTE
IEKIKPDFLIIDSIQTVMSPEISSVQGSVSQVREVTAELMQLAKTNNIATFIVGHMTKEGTLAGPRTLEHMVDTVLYFEG
ERQHTFRILRAVKNRFGSTNEIGIFEMQSGGLVEVINPSEVFLEERLDGATGSSIVVTMEGTRPILAEVQALVTPTMFGN
AKRTTTGLDFNRASLIMAVLEKRAGLLLQNQDAYLKSAGGVKLDEPAIDLAVAVAIASSYKDLPTNPQECFIGEIGLTGE
IRRVNRIEQRINEAAKLGFTKVYAPKNSLNGLKVPDNIQVIGVTTIGEVLKKVFS

Nucleotide


Download         Length: 1368 bp        

>NTDB_id=367196 FDP16_RS01115 WP_176799751.1 207736..209103(+) (radA) [Streptococcus sanguinis strain CGMH058]
ATCACCATCGCTAAGAAAAAAACGACCTTTGTCTGTCAAAATTGTGAATATCATTCGCCCAAGTACTTAGGGCGCTGTCC
CAACTGCGGCTCTTGGTCTTCCTTTGTTGAAGAAGTAGAGGCTGCTGAGGTCAAGCATGCCCGCGTTTCCTTGACGGGCG
AAAAGACCCGGCCCATGAAGCTGGCTGAGGTCACTTCGATTGATGTCAACCGTATCAAGACAGAAATGGACGAGTTCAAT
CGTGTGCTGGGTGGTGGAGTAGTTCCTGGCAGTCTGGTCCTGATTGGCGGGGATCCTGGTATAGGGAAGTCGACCCTGCT
TCTGCAGGTATCCACCCAGCTTTCTCATCAGGGCACAGTCCTTTATGTCAGCGGGGAGGAATCAGCTGAGCAGATTAAGC
TGCGGGCGGAACGCCTCGGTGATATTGACAGTGAATTTTATCTCTACGCCGAGACCAATATGCAAAATATCCGCACGGAG
ATTGAGAAAATCAAACCAGATTTTCTGATTATCGACTCTATACAGACGGTTATGTCGCCGGAAATTTCCAGTGTTCAAGG
CTCTGTCTCTCAGGTTCGTGAGGTGACTGCTGAGCTCATGCAGCTGGCCAAGACCAATAATATCGCGACCTTTATCGTTG
GTCACATGACCAAGGAAGGAACCTTAGCTGGCCCCCGAACGCTAGAGCACATGGTGGACACCGTGCTTTATTTTGAGGGC
GAACGTCAGCACACTTTCCGTATCTTGAGAGCAGTCAAGAACCGCTTTGGCTCGACCAATGAGATTGGTATCTTCGAAAT
GCAATCTGGTGGTCTAGTTGAGGTTATCAACCCCAGTGAAGTCTTTCTGGAAGAACGGCTGGACGGCGCGACAGGCTCTT
CCATCGTTGTAACCATGGAAGGGACGCGGCCGATTCTGGCGGAGGTGCAGGCCTTGGTAACACCGACTATGTTTGGCAAT
GCCAAGCGAACCACTACTGGTCTGGACTTTAACCGAGCCAGCCTCATCATGGCGGTTCTGGAAAAACGGGCGGGACTCCT
CCTACAAAATCAAGATGCCTACCTCAAGTCAGCTGGCGGGGTCAAGCTAGATGAGCCAGCCATTGATTTGGCGGTAGCTG
TAGCCATTGCTTCCAGCTACAAGGATCTTCCTACAAATCCTCAAGAGTGCTTTATCGGTGAAATTGGCCTGACTGGTGAA
ATTCGTCGGGTTAATCGCATCGAGCAGCGCATCAACGAAGCAGCAAAGTTGGGCTTCACCAAAGTCTACGCTCCTAAAAA
CTCTCTGAACGGTCTCAAAGTTCCAGACAATATCCAAGTCATCGGTGTGACGACGATTGGGGAAGTCTTAAAGAAAGTAT
TTTCCTGA

Domains

Predicted by InterproScan.

AAA domain (AAA_25)

(63-220)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(10-37)

Subunit ChlI of Mg-chelatase (ChlI)

(362-427)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Streptococcus mitis NCTC 12261

91.391

99.56

0.91
  radA Streptococcus pneumoniae D39

91.17

99.56

0.908
  radA Streptococcus pneumoniae R6

91.17

99.56

0.908
  radA Streptococcus pneumoniae Rx1

91.17

99.56

0.908
  radA Streptococcus mitis SK321

91.17

99.56

0.908
  radA Streptococcus pneumoniae TIGR4

91.17

99.56

0.908
  radA Bacillus subtilis subsp. subtilis str. 168

62.472

99.56

0.622

Multiple sequence alignment