Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrQ   Type   Regulator
Locus tag   FDP16_RS12020 Genome accession   NZ_CP040798
Coordinates   203624..204412 (+) Length   262 a.a.
NCBI ID   WP_371278048.1    Uniprot ID   -
Organism   Streptococcus sanguinis strain CGMH058     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 198624..209412
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FDP16_RS01070 (FDP16_01105) galU 198830..199735 (-) 906 WP_176798258.1 UTP--glucose-1-phosphate uridylyltransferase GalU -
  FDP16_RS01075 (FDP16_01110) - 199752..200774 (-) 1023 WP_061589322.1 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase -
  FDP16_RS01080 (FDP16_01115) - 200935..202641 (+) 1707 WP_176798259.1 ABC transporter ATP-binding protein -
  FDP16_RS12010 - 202643..202781 (+) 139 Protein_193 ABC transporter ATP-binding protein -
  FDP16_RS12015 - 202760..203485 (+) 726 Protein_194 ABC transporter ATP-binding protein -
  FDP16_RS12020 rcrQ 203624..204412 (+) 789 WP_371278048.1 ABC transporter ATP-binding protein Regulator
  FDP16_RS01090 (FDP16_01125) - 204595..205284 (+) 690 WP_002907876.1 gamma-glutamyl-gamma-aminobutyrate hydrolase family protein -
  FDP16_RS01095 (FDP16_01135) - 205550..205999 (+) 450 WP_176798261.1 8-oxo-dGTP diphosphatase -
  FDP16_RS01100 (FDP16_01145) - 206085..206528 (+) 444 WP_176798262.1 dUTP diphosphatase -
  FDP16_RS01105 (FDP16_01150) - 206530..207045 (+) 516 WP_176798263.1 histidine phosphatase family protein -
  FDP16_RS01110 (FDP16_01155) - 207098..207730 (+) 633 WP_176798264.1 methyltransferase domain-containing protein -
  FDP16_RS01115 (FDP16_01160) radA 207736..209103 (+) 1368 WP_176799751.1 DNA repair protein RadA Machinery gene

Sequence

Protein


Download         Length: 262 a.a.        Molecular weight: 29144.77 Da        Isoelectric Point: 4.4439

>NTDB_id=367257 FDP16_RS12020 WP_371278048.1 203624..204412(+) (rcrQ) [Streptococcus sanguinis strain CGMH058]
MFDSPEEVRPENAPAFTELTDSVEIKHVDFSYVEGKPILKDVSILAPKGKMTAVVGPTGSGKTTIMNLLNRFYDVDSGSI
EFDGRDIRDYELDSLRSHVGIVLQDSVLFSGTIRDNIRFGAPDASQEMVETAARATHIHDYIESLPDKYDTLVDDDQNIF
STGQKQLISIARTLLTDPQVLILDEATSNVDTVTESKIQQAMEAVVAGRTSFVIAHRLKTILNADQIIVLKDGEVIEQGN
HHQLLKLGGFYSELYHNQFVFE

Nucleotide


Download         Length: 789 bp        

>NTDB_id=367257 FDP16_RS12020 WP_371278048.1 203624..204412(+) (rcrQ) [Streptococcus sanguinis strain CGMH058]
ATGTTTGATTCGCCGGAGGAAGTCCGGCCAGAGAATGCACCTGCTTTCACTGAGCTCACAGACTCCGTTGAGATCAAGCA
TGTGGACTTCTCTTATGTGGAAGGCAAGCCCATTCTCAAAGACGTATCTATTTTAGCCCCTAAGGGCAAGATGACAGCTG
TTGTTGGCCCTACTGGCTCAGGAAAGACGACCATTATGAACCTGCTCAATCGTTTTTATGATGTAGACAGTGGCAGCATT
GAGTTTGACGGTCGCGACATTCGGGACTATGAGCTGGATAGCTTACGGAGCCATGTGGGCATTGTCTTGCAGGATTCGGT
GCTATTTAGCGGTACGATTCGGGACAATATCCGCTTCGGTGCACCAGATGCCAGTCAGGAGATGGTCGAAACGGCTGCGC
GTGCGACTCATATTCATGACTATATCGAAAGTCTGCCGGACAAATATGATACTCTGGTAGATGATGACCAGAATATTTTC
TCAACTGGGCAGAAACAGCTGATTTCCATTGCCAGAACCCTGCTGACAGACCCGCAAGTCTTGATTTTGGATGAAGCGAC
TTCCAATGTCGATACGGTAACAGAAAGCAAGATTCAGCAGGCCATGGAAGCCGTTGTGGCTGGCCGAACTAGCTTTGTCA
TTGCTCACCGCCTCAAGACGATTCTCAATGCTGACCAGATTATTGTCCTCAAAGACGGAGAGGTCATCGAACAGGGCAAT
CATCACCAACTCCTTAAACTCGGCGGCTTCTACTCAGAACTCTATCATAACCAGTTTGTGTTTGAGTAG

Domains

Predicted by InterproScan.

ABC transporter (ABC_tran)

(39-188)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrQ Streptococcus mutans UA159

48.289

100

0.485

Multiple sequence alignment