Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   FG342_RS02605 Genome accession   NZ_CP040780
Coordinates   512978..513568 (+) Length   196 a.a.
NCBI ID   WP_005709832.1    Uniprot ID   A0A0J6XXP0
Organism   Lacticaseibacillus rhamnosus strain 1.0320     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 507978..518568
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FG342_RS02585 gyrA 508594..511206 (+) 2613 WP_047677014.1 DNA gyrase subunit A -
  FG342_RS02590 deoC 511280..511984 (-) 705 WP_139041882.1 deoxyribose-phosphate aldolase -
  FG342_RS02595 ssb 512094..512525 (+) 432 WP_047677016.1 single-stranded DNA-binding protein -
  FG342_RS02600 rpsF 512652..512948 (+) 297 WP_005685677.1 30S ribosomal protein S6 -
  FG342_RS02605 ssb 512978..513568 (+) 591 WP_005709832.1 single-stranded DNA-binding protein Machinery gene
  FG342_RS02610 rpsR 513659..513895 (+) 237 WP_003568467.1 30S ribosomal protein S18 -
  FG342_RS02620 - 514303..514809 (-) 507 WP_005685670.1 type 1 glutamine amidotransferase domain-containing protein -
  FG342_RS02625 - 515120..516598 (+) 1479 WP_029606625.1 cytochrome ubiquinol oxidase subunit I -
  FG342_RS02630 cydB 516591..517610 (+) 1020 WP_047677019.1 cytochrome d ubiquinol oxidase subunit II -
  FG342_RS02635 - 517650..517844 (+) 195 WP_005685667.1 hypothetical protein -
  FG342_RS14965 - 517923..518180 (-) 258 WP_225350951.1 hypothetical protein -

Sequence

Protein


Download         Length: 196 a.a.        Molecular weight: 20932.66 Da        Isoelectric Point: 4.9056

>NTDB_id=367051 FG342_RS02605 WP_005709832.1 512978..513568(+) (ssb) [Lacticaseibacillus rhamnosus strain 1.0320]
MLNSVALTGRLTRDVDLRYTQSGTAVGSFTLAVDRQFRSANGERETDFINCVIWRKSAENFANFTKKGSLVGVEGHIQTR
TYDNAQGQKVYVTEVVVENFALLESRATTQQRPSEPANPAGQGNQNYGGGQQFGNNQPQNPPSFGSQGAPSNAPSSNPGQ
NPAAGQNQGNNGNAANPDPFANNGKPIDISDDDLPF

Nucleotide


Download         Length: 591 bp        

>NTDB_id=367051 FG342_RS02605 WP_005709832.1 512978..513568(+) (ssb) [Lacticaseibacillus rhamnosus strain 1.0320]
ATGCTTAACAGTGTTGCATTGACAGGTCGTTTAACCAGAGATGTTGACTTGCGCTATACGCAAAGTGGGACAGCTGTCGG
TTCATTCACTTTGGCCGTTGATCGCCAGTTCCGCAGTGCAAACGGCGAACGGGAAACCGACTTCATCAATTGTGTGATCT
GGCGTAAGTCAGCGGAGAATTTCGCTAACTTTACCAAGAAGGGATCATTGGTTGGTGTTGAAGGTCACATTCAAACACGT
ACTTACGATAATGCGCAAGGACAGAAAGTTTATGTGACTGAAGTCGTCGTTGAAAACTTTGCGTTACTGGAATCGCGGGC
AACCACCCAACAGCGGCCATCCGAACCTGCTAATCCTGCAGGTCAGGGAAATCAGAACTATGGCGGGGGACAGCAGTTTG
GCAACAACCAGCCGCAAAATCCGCCTAGCTTTGGCTCTCAAGGCGCCCCAAGTAATGCACCATCATCGAATCCGGGACAA
AACCCGGCAGCAGGTCAGAACCAAGGTAACAACGGTAATGCTGCTAATCCTGATCCATTTGCCAATAACGGCAAACCGAT
CGATATTTCCGATGATGATCTGCCATTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-102)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0J6XXP0

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Latilactobacillus sakei subsp. sakei 23K

60.204

100

0.602
  ssbA Bacillus subtilis subsp. subtilis str. 168

49.749

100

0.505

Multiple sequence alignment