Detailed information    

insolico Bioinformatically predicted

Overview

Name   comA   Type   Regulator
Locus tag   FED49_RS14865 Genome accession   NZ_CP040747
Coordinates   2828771..2829412 (-) Length   213 a.a.
NCBI ID   WP_007500477.1    Uniprot ID   -
Organism   Bacillus altitudinis strain HQ-51-Ba     
Function   promoting transcription of comS (predicted from homology)   
Competence regulation

Genomic Context

Location: 2823771..2834412
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FED49_RS14830 - 2824899..2825330 (+) 432 WP_008345843.1 Na(+)/H(+) antiporter subunit B -
  FED49_RS14835 - 2825330..2825671 (+) 342 WP_003213576.1 Na(+)/H(+) antiporter subunit C -
  FED49_RS14840 - 2825664..2827142 (+) 1479 WP_019744043.1 Na+/H+ antiporter subunit D -
  FED49_RS14845 - 2827149..2827628 (+) 480 WP_017358944.1 Na+/H+ antiporter subunit E -
  FED49_RS14850 - 2827628..2827909 (+) 282 WP_008345849.1 Na(+)/H(+) antiporter subunit F1 -
  FED49_RS14855 mnhG 2827893..2828267 (+) 375 WP_003213369.1 monovalent cation/H(+) antiporter subunit G -
  FED49_RS14860 - 2828358..2828747 (-) 390 WP_099496715.1 hotdog fold thioesterase -
  FED49_RS14865 comA 2828771..2829412 (-) 642 WP_007500477.1 response regulator transcription factor Regulator
  FED49_RS14870 comP 2829493..2831784 (-) 2292 WP_138826357.1 ATP-binding protein Regulator
  FED49_RS14875 comX 2831791..2831979 (-) 189 WP_306160900.1 competence pheromone ComX -
  FED49_RS14880 - 2831948..2832871 (-) 924 WP_138826360.1 polyprenyl synthetase family protein -
  FED49_RS14885 degQ 2833023..2833163 (-) 141 WP_003213123.1 degradation enzyme regulation protein DegQ Regulator
  FED49_RS14890 - 2833669..2834022 (+) 354 WP_019744042.1 hypothetical protein -

Sequence

Protein


Download         Length: 213 a.a.        Molecular weight: 24140.53 Da        Isoelectric Point: 4.5688

>NTDB_id=366962 FED49_RS14865 WP_007500477.1 2828771..2829412(-) (comA) [Bacillus altitudinis strain HQ-51-Ba]
MKKILVIDDHPAVMEGTKSILESDQQLSVDCLSPDAEGAFLKTHDFSIYDVILMDLNLGDINGMDIAKQILETNQQVKII
IYTGYEVDDYFEEAIRAGLHGAISKTETKDKIIEYIHRTLQGEVVIQLSYLKKLISQQQEKPEQAQQTDHELLTERECLI
LREVEKGYTNQEIADVLHLSKRSIEYSLTSIFNKLNVGSRTEAVLIAKSESVL

Nucleotide


Download         Length: 642 bp        

>NTDB_id=366962 FED49_RS14865 WP_007500477.1 2828771..2829412(-) (comA) [Bacillus altitudinis strain HQ-51-Ba]
ATGAAGAAGATATTGGTCATTGATGATCATCCGGCTGTCATGGAAGGGACAAAAAGCATATTAGAATCAGATCAGCAGCT
ATCAGTCGATTGTTTAAGTCCTGATGCAGAAGGCGCCTTTTTAAAGACGCATGACTTTTCCATCTATGATGTGATCTTGA
TGGATTTAAATCTCGGGGATATCAATGGAATGGACATTGCCAAACAAATTCTAGAAACGAATCAACAAGTGAAAATTATC
ATTTATACAGGATATGAAGTAGATGATTATTTCGAAGAGGCCATTCGAGCTGGATTGCATGGTGCAATAAGTAAAACAGA
GACAAAAGACAAAATCATTGAATACATACACCGCACATTGCAAGGAGAAGTTGTCATTCAGCTATCCTATTTAAAGAAAT
TAATTTCACAGCAGCAAGAAAAGCCAGAACAGGCGCAGCAGACGGATCATGAGCTGTTAACAGAGCGTGAATGTTTAATC
TTAAGAGAAGTGGAAAAAGGGTACACAAACCAAGAGATCGCCGATGTGCTTCATTTGAGCAAACGCTCGATTGAATACAG
TTTGACCTCCATCTTTAATAAGCTGAATGTTGGATCTCGAACAGAAGCGGTGTTAATTGCAAAATCGGAAAGTGTCCTGT
AA

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, luxR family (GerE)

(152-207)

Response regulator receiver domain (Response_reg)

(4-116)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comA Bacillus subtilis subsp. subtilis str. 168

71.495

100

0.718

Multiple sequence alignment