Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprA   Type   Machinery gene
Locus tag   FED49_RS08170 Genome accession   NZ_CP040747
Coordinates   1565894..1566796 (+) Length   300 a.a.
NCBI ID   WP_138825737.1    Uniprot ID   -
Organism   Bacillus altitudinis strain HQ-51-Ba     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 1560894..1571796
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FED49_RS08150 - 1561560..1563296 (+) 1737 WP_138825735.1 glycosyltransferase -
  FED49_RS08155 - 1563293..1563568 (+) 276 WP_008344827.1 FlhB-like flagellar biosynthesis protein -
  FED49_RS08160 sucC 1563745..1564905 (+) 1161 WP_008344824.1 ADP-forming succinate--CoA ligase subunit beta -
  FED49_RS08165 sucD 1564928..1565830 (+) 903 WP_007499624.1 succinate--CoA ligase subunit alpha -
  FED49_RS08170 dprA 1565894..1566796 (+) 903 WP_138825737.1 DNA-processing protein DprA Machinery gene
  FED49_RS08175 topA 1566991..1569066 (+) 2076 WP_017367241.1 type I DNA topoisomerase -
  FED49_RS08180 trmFO 1569137..1570441 (+) 1305 WP_138825739.1 FADH(2)-oxidizing methylenetetrahydrofolate--tRNA-(uracil(54)-C(5))- methyltransferase TrmFO -
  FED49_RS08185 xerC 1570504..1571421 (+) 918 WP_007499616.1 tyrosine recombinase XerC -

Sequence

Protein


Download         Length: 300 a.a.        Molecular weight: 34031.35 Da        Isoelectric Point: 8.2776

>NTDB_id=366942 FED49_RS08170 WP_138825737.1 1565894..1566796(+) (dprA) [Bacillus altitudinis strain HQ-51-Ba]
MYNVSERMIFHRLKGLISPSLLTKWWKVDPELYINEETHHFKQDRSLQKIDFTRLQQAEENEFPIFQHIVQAYLKQNIHM
IPITSPLYPSSLKHIYDPPPVLFLKGNVTYLNEEKSLGVVGTRVPSSYGEACVKKIVGELVEEDWMIVSGLAKGIDGLAH
KECIRKKGKTIGAVAGGFQHVYPKEHVQMAQYMGEHHLLLSEHPPYIKPEKWHFPMRNRLISALTRGTIVVQCKEKSGSL
ITAYQALEQGKEVFAVAGSIFDSNSIGPARLIQQGAKLVHSTKDILEEFSLSGVQYTELP

Nucleotide


Download         Length: 903 bp        

>NTDB_id=366942 FED49_RS08170 WP_138825737.1 1565894..1566796(+) (dprA) [Bacillus altitudinis strain HQ-51-Ba]
ATGTACAACGTGTCCGAAAGAATGATTTTTCACCGCTTAAAAGGCCTCATCTCACCCTCTTTGTTAACAAAATGGTGGAA
GGTCGATCCTGAGCTATATATAAATGAAGAAACACATCATTTCAAACAGGATCGATCATTACAAAAGATCGACTTTACCC
GCTTACAACAAGCTGAAGAAAATGAATTCCCCATTTTTCAACACATCGTTCAAGCCTATTTAAAGCAAAATATTCACATG
ATTCCCATCACATCACCTTTATATCCCAGCTCACTAAAACACATTTATGATCCTCCCCCAGTATTATTCCTAAAAGGAAA
CGTTACCTATTTAAATGAAGAAAAAAGTTTAGGTGTAGTAGGTACACGAGTGCCATCCTCTTACGGAGAAGCGTGCGTGA
AGAAAATTGTTGGAGAACTTGTAGAGGAAGATTGGATGATTGTGAGTGGTTTAGCAAAAGGAATTGATGGACTTGCACAC
AAAGAGTGCATAAGAAAAAAAGGAAAAACGATTGGTGCTGTAGCTGGCGGCTTTCAACATGTATATCCAAAAGAACATGT
GCAAATGGCTCAATATATGGGAGAACATCATTTACTGTTGTCAGAGCATCCGCCTTATATCAAACCAGAAAAATGGCATT
TTCCAATGAGAAACCGATTAATTAGTGCCCTGACAAGAGGAACCATCGTGGTCCAGTGCAAAGAAAAGAGCGGTTCGCTT
ATTACAGCCTACCAGGCATTAGAGCAAGGAAAAGAAGTGTTTGCTGTTGCAGGATCGATCTTTGATTCTAATTCTATAGG
TCCAGCTAGACTGATTCAGCAAGGTGCCAAGCTTGTTCATTCAACGAAGGATATTTTAGAGGAATTCTCCTTGAGCGGTG
TTCAATATACTGAACTCCCATAA

Domains

Predicted by InterproScan.

DNA recombination-mediator protein A (DNA_processg_A)

(75-280)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Bacillus subtilis subsp. subtilis str. 168

54.355

95.667

0.52
  dprA Lactococcus lactis subsp. cremoris KW2

39.373

95.667

0.377
  dprA Legionella pneumophila strain ERS1305867

37.049

100

0.377

Multiple sequence alignment