Detailed information    

insolico Bioinformatically predicted

Overview

Name   comK/comK1   Type   Regulator
Locus tag   FGY92_RS08215 Genome accession   NZ_CP040732
Coordinates   1667335..1667919 (+) Length   194 a.a.
NCBI ID   WP_017175793.1    Uniprot ID   A0A4V2KX31
Organism   Staphylococcus hominis strain S34-1     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 1662335..1672919
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FGY92_RS08185 (FGY92_08245) - 1663213..1664580 (-) 1368 WP_235063141.1 isochorismate synthase -
  FGY92_RS08190 (FGY92_08250) - 1664761..1665699 (+) 939 WP_049379560.1 1,4-dihydroxy-2-naphthoate polyprenyltransferase -
  FGY92_RS08195 (FGY92_08255) - 1665747..1666298 (-) 552 WP_017175790.1 GNAT family N-acetyltransferase -
  FGY92_RS08200 (FGY92_08260) - 1666442..1666654 (+) 213 WP_017175791.1 TM2 domain-containing protein -
  FGY92_RS08205 - 1666743..1666841 (+) 99 WP_017175792.1 SAR1012 family small protein -
  FGY92_RS08210 (FGY92_08265) - 1666909..1667127 (-) 219 WP_002488353.1 IDEAL domain-containing protein -
  FGY92_RS08215 (FGY92_08270) comK/comK1 1667335..1667919 (+) 585 WP_017175793.1 competence protein ComK Regulator
  FGY92_RS08230 (FGY92_08285) - 1668320..1669309 (-) 990 WP_049416368.1 lipoate--protein ligase -
  FGY92_RS08235 (FGY92_08290) - 1669498..1669674 (+) 177 WP_002448045.1 YkvS family protein -
  FGY92_RS08240 (FGY92_08295) - 1669690..1670292 (+) 603 WP_235063142.1 type II CAAX prenyl endopeptidase Rce1 family protein -
  FGY92_RS08245 (FGY92_08300) - 1670456..1671814 (-) 1359 WP_002488327.1 TrkH family potassium uptake protein -

Sequence

Protein


Download         Length: 194 a.a.        Molecular weight: 22941.26 Da        Isoelectric Point: 9.5206

>NTDB_id=366840 FGY92_RS08215 WP_017175793.1 1667335..1667919(+) (comK/comK1) [Staphylococcus hominis strain S34-1]
MTQFNKPPNTIYVIRKGDMVIRPTFDDHQQPNGSEILKFDTSREISPFKTQKIIERSCRFYGNNYLSKKAETQRIAGITS
KPPILLTPLFPTYFFPTHSDRLEENIWINMHYISDIKPLKNRKSKIIFANQEALTLNVSFHSLWHQYSNSIFYYYMIDKQ
ARMKSNNPDMPIDYEKTSLNIFEALSHYSLLEDK

Nucleotide


Download         Length: 585 bp        

>NTDB_id=366840 FGY92_RS08215 WP_017175793.1 1667335..1667919(+) (comK/comK1) [Staphylococcus hominis strain S34-1]
ATGACTCAGTTCAATAAACCTCCTAATACGATTTATGTCATACGTAAAGGTGATATGGTGATTAGACCTACATTTGACGA
TCATCAACAACCGAACGGCTCAGAAATCCTCAAATTCGATACCTCACGAGAAATAAGTCCTTTTAAAACTCAAAAAATTA
TTGAACGATCTTGTAGATTTTATGGCAATAACTACTTAAGCAAGAAAGCTGAAACTCAACGCATTGCTGGAATAACTAGT
AAACCTCCCATCCTTCTCACACCATTGTTTCCAACTTACTTTTTCCCAACACATTCAGACCGTTTAGAAGAAAATATATG
GATTAATATGCATTATATTTCTGATATTAAGCCATTAAAAAACAGAAAGAGTAAAATTATCTTTGCAAATCAAGAAGCAC
TAACATTAAATGTATCTTTTCATAGTTTATGGCATCAATATTCTAATTCTATTTTCTATTACTATATGATTGATAAACAA
GCAAGAATGAAATCTAATAATCCAGATATGCCAATCGATTATGAAAAAACATCTTTAAATATTTTTGAGGCACTTTCACA
CTATTCTTTATTAGAAGATAAATAG

Domains

Predicted by InterproScan.

ComK protein (ComK)

(11-161)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A4V2KX31

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comK/comK1 Staphylococcus aureus MW2

74.457

94.845

0.706
  comK/comK1 Staphylococcus aureus N315

74.457

94.845

0.706

Multiple sequence alignment