Detailed information    

insolico Bioinformatically predicted

Overview

Name   ccrB   Type   Machinery gene
Locus tag   FGY92_RS00200 Genome accession   NZ_CP040732
Coordinates   38257..39882 (-) Length   541 a.a.
NCBI ID   WP_235063213.1    Uniprot ID   -
Organism   Staphylococcus hominis strain S34-1     
Function   promote SCCmec transfer (predicted from homology)   
Homologous recombination

Genomic Context

Location: 33257..44882
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FGY92_RS00160 (FGY92_00165) - 33393..33896 (-) 504 WP_235063208.1 DUF1643 domain-containing protein -
  FGY92_RS00165 (FGY92_00170) - 33914..34225 (-) 312 WP_235063209.1 DUF960 family protein -
  FGY92_RS00170 (FGY92_00175) - 34312..34662 (-) 351 WP_235063210.1 SAUGI family uracil-DNA glycosylase inhibitor -
  FGY92_RS00175 (FGY92_00180) - 35192..35857 (-) 666 WP_235063211.1 hypothetical protein -
  FGY92_RS00180 (FGY92_00185) - 35909..36418 (-) 510 WP_168753978.1 hypothetical protein -
  FGY92_RS00185 (FGY92_00190) - 36415..36987 (-) 573 WP_168753977.1 hypothetical protein -
  FGY92_RS00190 (FGY92_00195) - 37019..37588 (-) 570 WP_168753976.1 hypothetical protein -
  FGY92_RS00195 (FGY92_00200) - 37603..38130 (-) 528 WP_235063212.1 hypothetical protein -
  FGY92_RS00200 (FGY92_00205) ccrB 38257..39882 (-) 1626 WP_235063213.1 cassette chromosome recombinase CcrB Machinery gene
  FGY92_RS00205 (FGY92_00210) ccrA 39879..41240 (-) 1362 WP_235063214.1 cassette chromosome recombinase CcrA Machinery gene
  FGY92_RS00210 (FGY92_00215) cch1 41441..43219 (-) 1779 WP_412766242.1 cassette chromosome replicative helicase -
  FGY92_RS00215 (FGY92_00220) ssb 43219..43509 (-) 291 WP_232133027.1 cassette chromosome ssDNA-binding protein -

Sequence

Protein


Download         Length: 541 a.a.        Molecular weight: 62321.51 Da        Isoelectric Point: 9.7539

>NTDB_id=366814 FGY92_RS00200 WP_235063213.1 38257..39882(-) (ccrB) [Staphylococcus hominis strain S34-1]
MTQLKKKRIGLYARVSTEMQTDGYSIQGQLNQLTEYCQFQGYEVVNEYTDRGISGKTTQRPELQRMLKDANDGKLDCIMV
YKTNRLARNTSDLLNIVEELYKINVEFFSLTEKIEIASSTGKLMLQILASFSEFERNTIVENVYNGQRQRAIEGYYQGNL
PLGYDKVPDSKKELMINQHEANIVKYIFESYAKGHGYRKIANALNHKGYVTKKGKPFSISSITYIISNPFYIGKIQFAKY
RHWSDKRRKGLNEEPIIADGKHAPIIDRNLWDKVQFKRQESRKKPQVHGKGTNLLTGIVKCPKCGAAMAASNTTNTLKDG
TKKRIRYYSCSNFRNKGSKVCSANSVRADVLEKYVMDQILEIIKSKKVLKQLVEKVNKKSQIDVSSLNHDIAYKQSQCEE
IKSKMHTLTKTIEDSPDLDSVLKPTILSYQDELNQINNQIHQLEQDKQAEAPHYDADMIANILQAIFKDIDKLEKSQLKS
LYLTVIDRIDIRKHEHHKKQFYVTLKLNNDIIKQLFNNHPLDEVLLSTSSLFLSQTLYLTI

Nucleotide


Download         Length: 1626 bp        

>NTDB_id=366814 FGY92_RS00200 WP_235063213.1 38257..39882(-) (ccrB) [Staphylococcus hominis strain S34-1]
ATGACACAACTCAAAAAGAAACGTATTGGATTATATGCACGTGTATCGACTGAAATGCAGACCGATGGTTACAGTATTCA
AGGTCAATTGAACCAACTTACAGAGTATTGTCAATTTCAAGGCTATGAAGTTGTTAATGAATATACCGATCGTGGTATAT
CGGGTAAAACAACGCAACGCCCTGAACTGCAACGTATGTTAAAAGATGCAAACGACGGTAAGTTAGATTGTATTATGGTC
TACAAAACCAATCGTTTAGCTAGAAATACCTCAGACTTACTAAATATTGTCGAAGAATTGTATAAGATTAATGTCGAATT
TTTTAGTCTAACTGAAAAAATAGAAATTGCCAGCTCAACAGGTAAATTGATGCTCCAAATTCTTGCTAGTTTCTCTGAGT
TTGAAAGAAATACAATCGTAGAAAACGTTTATAACGGTCAAAGACAACGTGCCATTGAAGGTTATTACCAAGGTAATTTA
CCTCTAGGCTATGATAAAGTACCTGACAGTAAAAAGGAGCTCATGATTAATCAACATGAAGCAAATATTGTTAAATATAT
TTTTGAGTCATACGCCAAAGGTCATGGTTATCGTAAGATTGCGAATGCATTAAATCACAAAGGTTATGTAACTAAGAAAG
GTAAACCGTTTAGTATTTCATCCATTACCTACATCATCTCAAACCCTTTTTACATTGGAAAGATACAGTTTGCGAAGTAT
AGACACTGGAGCGATAAGAGACGAAAAGGACTCAATGAAGAACCGATTATCGCAGATGGTAAGCATGCACCTATTATTGA
TAGAAACTTATGGGATAAAGTGCAATTCAAACGCCAAGAGAGTCGCAAGAAACCACAAGTTCATGGTAAAGGGACAAACT
TACTGACTGGTATTGTAAAATGTCCGAAATGTGGTGCAGCAATGGCGGCAAGTAATACAACCAATACGTTAAAAGATGGC
ACTAAGAAACGAATCAGATATTACTCATGTAGCAATTTTAGAAACAAAGGTTCAAAAGTATGTAGTGCTAATTCTGTTAG
AGCAGATGTATTAGAAAAATATGTTATGGACCAGATATTAGAAATTATCAAAAGTAAAAAGGTATTGAAACAATTGGTTG
AAAAGGTAAATAAAAAAAGTCAAATAGACGTCTCTTCTTTGAATCATGATATTGCCTATAAACAGTCACAATGTGAAGAA
ATAAAATCCAAAATGCATACACTAACGAAAACCATTGAAGACTCACCTGACTTAGATAGCGTATTGAAACCAACAATACT
TAGCTACCAAGATGAATTGAATCAAATAAATAATCAAATACATCAACTAGAACAAGATAAACAAGCGGAAGCTCCACATT
ATGATGCTGATATGATTGCCAACATACTACAAGCAATATTCAAAGATATAGACAAATTAGAGAAATCTCAGTTGAAATCA
CTCTATCTGACGGTTATCGATCGTATTGATATCCGAAAACATGAACATCATAAGAAGCAATTTTATGTTACGCTCAAATT
GAATAATGATATTATCAAACAACTATTTAATAACCATCCACTTGACGAAGTGCTCCTTAGCACTTCGTCTTTATTTTTAT
CCCAAACATTATATCTTACTATTTAA

Domains

Predicted by InterproScan.

Ogr/Delta-like zinc finger (Ogr_Delta)

(300-355)

Recombinase (Recombinase)

(179-280)

Resolvase, N terminal domain (Resolvase)

(11-154)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ccrB Staphylococcus aureus N315

72.878

100

0.73

Multiple sequence alignment