Detailed information NTG0366808

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: FGF03_RS19155
• Genome accession: NZ_CP040724
• Coordinates: 3884992..3885792 (-)
• Length: 266 a.a.
• NCBI ID: WP_004191960.1
• Uniprot ID: A0AAJ5B1F9
• Organism: Klebsiella pneumoniae strain KpvST147B_SE1_1_NDM
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 3879992..3890792

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
FGF03_RS19135 (FGF03_19135)	dksA	3880572..3881027 (-)	456	WP_002888845.1	RNA polymerase-binding protein DksA	-
FGF03_RS19140 (FGF03_19140)	sfsA	3881190..3881906 (-)	717	WP_002888848.1	DNA/RNA nuclease SfsA	-
FGF03_RS19145 (FGF03_19145)	thpR	3881906..3882442 (-)	537	WP_004145901.1	RNA 2',3'-cyclic phosphodiesterase	-
FGF03_RS19150 (FGF03_19150)	hrpB	3882515..3884944 (+)	2430	WP_064472269.1	ATP-dependent helicase HrpB	-
FGF03_RS19155 (FGF03_19155)	pilD	3884992..3885792 (-)	801	WP_004191960.1	prepilin peptidase	Machinery gene
FGF03_RS19160 (FGF03_19160)	-	3885789..3886535 (-)	747	WP_004145897.1	type II secretion system protein N	-
FGF03_RS19165 (FGF03_19165)	-	3886525..3887010 (-)	486	WP_004145896.1	type II secretion system protein M	-
FGF03_RS19170 (FGF03_19170)	gspL	3887003..3888196 (-)	1194	WP_032416685.1	type II secretion system protein GspL	-
FGF03_RS19175 (FGF03_19175)	gspK	3888183..3889169 (-)	987	WP_077255453.1	type II secretion system minor pseudopilin GspK	-
FGF03_RS19180 (FGF03_19180)	gspJ	3889166..3889762 (-)	597	WP_032433846.1	type II secretion system minor pseudopilin GspJ	-
FGF03_RS19185 (FGF03_19185)	gspI	3889759..3890124 (-)	366	WP_002889025.1	type II secretion system minor pseudopilin GspI	-
FGF03_RS19190 (FGF03_19190)	gspH	3890121..3890636 (-)	516	WP_032422016.1	type II secretion system minor pseudopilin GspH	-

Sequence

Protein

• Length: 266 a.a.
• Molecular weight: 29403.04 Da
• Isoelectric Point: 8.8894

>NTDB_id=366808 FGF03_RS19155 WP_004191960.1 3884992..3885792(-) (pilD) [Klebsiella pneumoniae strain KpvST147B_SE1_1_NDM]
MTTLAALSLHFPFVWYGFLLLFGLALGSFYNVVIYRLPRMLTQTADDERITLSTPGSSCPQCRQPIAWRDNIPLLSFLWL
GRRARCCQAPIAWSYPLTELATGLLFILAGALLAPGLPLAGGLVLLSFLLILARIDARTQLLPDRLTLPLLWAGLLFNLN
EVYIALPDAVAGAMAGYLALWSVYWLFRLLTGKEALGYGDFKLLAALGAWCGWQVLPQVLLLASASGLVWTLLQRLWTRQ
SLQQPLAFGPWLALAGGGIFLWQQMI

Nucleotide

• Length: 801 bp

>NTDB_id=366808 FGF03_RS19155 WP_004191960.1 3884992..3885792(-) (pilD) [Klebsiella pneumoniae strain KpvST147B_SE1_1_NDM]
ATGACGACACTAGCCGCGTTATCGCTGCACTTTCCCTTTGTCTGGTATGGCTTTCTGCTGCTGTTCGGCCTGGCGCTGGG
CAGCTTTTACAATGTGGTGATCTATCGTCTGCCGCGCATGTTGACCCAGACCGCGGACGACGAGCGGATAACCCTCAGCA
CCCCGGGATCTTCCTGCCCGCAGTGCCGCCAGCCGATCGCCTGGCGGGACAATATCCCGCTGCTCAGTTTCCTCTGGCTG
GGCCGTCGCGCCCGCTGCTGTCAGGCGCCCATCGCGTGGAGCTATCCGCTGACCGAGCTGGCCACCGGCCTGCTGTTTAT
CCTCGCCGGAGCTTTGCTGGCGCCGGGCCTGCCGCTGGCGGGCGGCCTGGTGCTGCTCTCGTTCCTGCTGATACTGGCGC
GGATTGACGCCCGGACCCAGCTGCTGCCCGATCGCCTGACTCTGCCCCTGCTGTGGGCCGGGCTGCTGTTCAATCTTAAC
GAGGTGTACATTGCCCTGCCGGATGCGGTCGCCGGGGCGATGGCCGGTTATCTGGCGCTGTGGTCGGTCTACTGGCTGTT
CCGCCTGCTGACCGGGAAAGAGGCGCTGGGCTATGGCGATTTTAAGCTGCTGGCGGCGCTGGGCGCCTGGTGCGGCTGGC
AGGTTCTGCCGCAGGTGCTGTTGCTCGCTTCGGCCAGCGGGCTGGTGTGGACCCTACTGCAACGCCTGTGGACCCGGCAG
TCGCTGCAGCAGCCGCTGGCCTTCGGCCCCTGGCTGGCGCTGGCCGGCGGGGGTATTTTTCTCTGGCAGCAGATGATCTA
G

Domains

Predicted by InterproScan.

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (21-109)

• Type IV leader peptidase family (Peptidase_A24) (123-231)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Vibrio cholerae strain A1552	49.057	99.624	0.489
pilD	Vibrio campbellii strain DS40M4	46.545	100	0.481
pilD	Acinetobacter nosocomialis M2	46.388	98.872	0.459
pilD	Acinetobacter baumannii D1279779	45.627	98.872	0.451
pilD	Neisseria gonorrhoeae MS11	43.922	95.865	0.421