Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   FGM00_RS19260 Genome accession   NZ_CP040710
Coordinates   4628485..4629846 (-) Length   453 a.a.
NCBI ID   WP_138854485.1    Uniprot ID   A0A5B7SXX3
Organism   Aggregatimonas sangjinii strain F202Z8     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 4623485..4634846
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FGM00_RS19255 (FGM00_19255) - 4627337..4628377 (+) 1041 WP_138854484.1 aldo/keto reductase -
  FGM00_RS19260 (FGM00_19260) radA 4628485..4629846 (-) 1362 WP_138854485.1 DNA repair protein RadA Machinery gene
  FGM00_RS19265 (FGM00_19265) - 4630252..4630956 (-) 705 WP_138854486.1 hypothetical protein -
  FGM00_RS19270 (FGM00_19270) - 4631339..4632481 (-) 1143 WP_138854487.1 alpha/beta hydrolase -
  FGM00_RS19275 (FGM00_19275) - 4632511..4633476 (-) 966 WP_138854488.1 lysylphosphatidylglycerol synthase transmembrane domain-containing protein -
  FGM00_RS19280 (FGM00_19280) panD 4633478..4633828 (-) 351 WP_138854489.1 aspartate 1-decarboxylase -
  FGM00_RS19285 (FGM00_19285) panC 4633852..4634697 (-) 846 WP_138854490.1 pantoate--beta-alanine ligase -

Sequence

Protein


Download         Length: 453 a.a.        Molecular weight: 49645.29 Da        Isoelectric Point: 7.2610

>NTDB_id=366728 FGM00_RS19260 WP_138854485.1 4628485..4629846(-) (radA) [Aggregatimonas sangjinii strain F202Z8]
MAKTKTAFFCQNCGTQYAKWVGQCSACKEWNTVVEEVVQKEEKKGWNAPSNSKRKIAKPLRVNEISTEKELRLDTFDLEF
NRVLGGGLVPGSLVLLGGEPGVGKSTLILQIALKLPYKTLYVSGEESQKQIKMRADRIHPASETCLILTETKTQNIFQQI
EATEPDIVVIDSIQTLHSDYIESAAGSISQIRECTAELIKFAKETNTPVILIGHITKDGSIAGPKILEHMVDTVLQFEGD
RNYVYRILRALKNRFGSTAELGIYEMQGSGLRQVNNPSEILISKNDEGLSGTAIASTVEGMRPLMIEIQALVSTAVYGTP
QRSTTGYNAKRLNMLLAVLEKRAGFKLGAKDVFLNITGGISVDDPAIDLAVIAAILSSNSDIPIEKGICFAAEVGLAGEI
RPVQRVEQRILEAEKLGFTTIYVSKNNKMGLKHTKIEVKLATRIEDVVGDLFA

Nucleotide


Download         Length: 1362 bp        

>NTDB_id=366728 FGM00_RS19260 WP_138854485.1 4628485..4629846(-) (radA) [Aggregatimonas sangjinii strain F202Z8]
ATGGCCAAGACCAAAACAGCTTTTTTTTGTCAAAATTGTGGGACGCAGTACGCCAAATGGGTCGGACAATGTTCGGCCTG
CAAGGAATGGAATACCGTTGTCGAAGAGGTCGTTCAAAAAGAGGAAAAGAAGGGTTGGAATGCGCCTTCGAATAGCAAAC
GGAAAATTGCGAAACCCCTCCGTGTTAATGAAATCAGTACGGAAAAAGAACTTCGATTGGATACGTTCGACCTCGAATTC
AATAGGGTTCTGGGCGGCGGACTTGTACCTGGGTCGTTGGTGCTTTTGGGCGGGGAACCTGGTGTGGGCAAAAGCACGCT
AATACTTCAAATCGCCCTAAAATTACCTTACAAAACCTTGTATGTTTCAGGCGAAGAAAGCCAAAAGCAGATCAAGATGC
GGGCAGATCGTATTCATCCTGCAAGCGAAACCTGCCTAATTCTTACGGAGACCAAGACACAGAATATCTTTCAACAGATA
GAGGCTACAGAACCCGATATCGTCGTCATCGACTCTATTCAAACCCTGCACTCTGATTATATCGAATCGGCAGCCGGAAG
TATTTCACAGATACGGGAATGTACGGCCGAATTGATCAAATTCGCCAAGGAAACCAATACCCCGGTCATCTTGATCGGCC
ATATTACCAAAGACGGTTCGATCGCGGGGCCTAAAATCCTGGAACATATGGTCGATACCGTTTTACAGTTCGAGGGTGAC
CGCAATTACGTGTACCGTATTCTACGTGCGCTTAAAAACCGCTTTGGTTCTACCGCGGAGTTGGGCATCTACGAAATGCA
GGGCAGTGGCTTACGGCAAGTGAACAATCCCTCCGAAATATTGATTTCAAAAAACGATGAGGGTTTGAGTGGTACGGCAA
TCGCCTCGACCGTTGAGGGCATGCGACCGCTGATGATAGAAATTCAGGCCCTCGTGAGTACGGCAGTTTATGGCACCCCG
CAGCGTTCTACCACGGGTTACAATGCCAAACGCTTGAACATGCTTTTGGCGGTTTTGGAAAAACGGGCGGGCTTTAAGCT
AGGTGCTAAAGACGTTTTCCTGAACATTACGGGGGGTATCTCCGTTGATGACCCGGCAATTGATCTGGCGGTCATCGCAG
CCATCCTCTCCAGTAATTCCGATATTCCCATTGAAAAAGGCATTTGTTTCGCGGCAGAGGTGGGACTTGCAGGTGAAATT
CGTCCTGTACAACGCGTAGAGCAGCGCATATTAGAGGCCGAAAAACTGGGTTTTACAACCATTTATGTCTCCAAAAACAA
TAAAATGGGATTGAAACACACCAAAATCGAAGTGAAATTAGCCACCCGCATCGAGGATGTGGTGGGTGATTTATTTGCTT
AA

Domains

Predicted by InterproScan.

AAA domain (AAA_25)

(83-219)

Subunit ChlI of Mg-chelatase (ChlI)

(338-427)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(9-35)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A5B7SXX3

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Streptococcus pneumoniae D39

48.904

100

0.492
  radA Streptococcus mitis NCTC 12261

48.904

100

0.492
  radA Streptococcus pneumoniae Rx1

48.904

100

0.492
  radA Streptococcus pneumoniae R6

48.904

100

0.492
  radA Streptococcus pneumoniae TIGR4

48.904

100

0.492
  radA Streptococcus mitis SK321

48.684

100

0.49
  radA Bacillus subtilis subsp. subtilis str. 168

50.226

97.572

0.49

Multiple sequence alignment