Detailed information NTG0366451

Bioinformatically predicted

Overview

• Name: recF
• Type: Machinery gene
• Locus tag: GV831_RS11525
• Genome accession: NZ_CP047891
• Coordinates: 2305017..2306093 (-)
• Length: 358 a.a.
• NCBI ID: WP_004254743.1
• Uniprot ID: -
• Organism: Lactococcus lactis subsp. lactis strain WHH2311
• Function: homologous recombination (predicted from homology) Homologous recombination

Genomic Context

Location: 2300017..2311093

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
GV831_RS11505 (GV831_11450)	galE	2302047..2303027 (+)	981	WP_010906245.1	UDP-glucose 4-epimerase GalE	-
GV831_RS11510 (GV831_11455)	-	2303150..2304094 (+)	945	WP_010906244.1	alpha/beta hydrolase	-
GV831_RS11515 (GV831_11460)	-	2304107..2304484 (-)	378	WP_010906243.1	MerR family transcriptional regulator	-
GV831_RS11520 (GV831_11465)	-	2304562..2304930 (+)	369	WP_004254740.1	carboxymuconolactone decarboxylase family protein	-
GV831_RS11525 (GV831_11470)	recF	2305017..2306093 (-)	1077	WP_004254743.1	DNA replication/repair protein RecF	Machinery gene
GV831_RS11530 (GV831_11475)	yaaA	2306093..2306455 (-)	363	WP_004254746.1	S4 domain-containing protein YaaA	-
GV831_RS11535 (GV831_11480)	yfmF	2306653..2307939 (+)	1287	WP_021214872.1	EF-P 5-aminopentanol modification-associated protein YfmF	-
GV831_RS11540 (GV831_11485)	yfmH	2307929..2309212 (+)	1284	WP_004254752.1	EF-P 5-aminopentanol modification-associated protein YfmH	-
GV831_RS11545 (GV831_11490)	-	2309424..2310320 (+)	897	WP_004254758.1	RodZ family helix-turn-helix domain-containing protein	-
GV831_RS11550 (GV831_11495)	pgsA	2310361..2310933 (+)	573	WP_004254763.1	CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase	-

Sequence

Protein

• Length: 358 a.a.
• Molecular weight: 41382.31 Da
• Isoelectric Point: 6.8652

>NTDB_id=366451 GV831_RS11525 WP_004254743.1 2305017..2306093(-) (recF) [Lactococcus lactis subsp. lactis strain WHH2311]
MKLKAIELKNFRNYEELKLDFHPNLNIFLGQNAQGKTNILEAIHFLALTRSHRTSHDKELISWSQQEMKVSGVVEKAHAT
VPLEVQLSPKGRIAKANHLKENRLADYIGQLKILMFAPENLELVKGSPATRRKFMDIELGQIHAVYLYDSMRYNRALKER
NAYLKFDKDKIDKNFLSVLDGQLAEHGNKIMLERQNFIDKLEVHAKKIHEQLTHGKENLKIIYNQNVKTDFSKELLIRQD
HDIFRHQTSVGPHRDDLQFFINEINVADFGSQGQQRTVALSIKLAEIDLIFEETGEYPILLLDDVMSELDNHRQLDLIET
SLGKTQTFITTTTLDHLKNLPENLSIFHVNAGTIEQEQ

Nucleotide

• Length: 1077 bp

>NTDB_id=366451 GV831_RS11525 WP_004254743.1 2305017..2306093(-) (recF) [Lactococcus lactis subsp. lactis strain WHH2311]
ATGAAACTCAAAGCAATTGAACTCAAAAATTTTCGTAATTATGAGGAATTAAAACTTGATTTTCACCCTAATCTCAATAT
TTTTTTAGGACAAAATGCTCAAGGGAAAACAAATATTCTTGAGGCGATTCATTTTTTAGCACTCACTCGTAGTCACAGAA
CAAGTCACGACAAAGAGCTCATTTCTTGGTCACAACAAGAAATGAAGGTCTCAGGAGTCGTTGAAAAAGCTCATGCAACT
GTTCCACTTGAAGTTCAATTAAGTCCCAAAGGGAGAATTGCTAAAGCCAATCATCTCAAAGAAAATCGCTTAGCCGACTA
CATTGGTCAACTAAAAATCTTGATGTTTGCACCTGAAAATTTGGAATTAGTCAAAGGTTCTCCAGCTACCCGCAGAAAAT
TTATGGATATTGAACTGGGACAAATCCATGCGGTTTACCTTTATGATTCCATGCGATATAATCGTGCGTTAAAAGAACGG
AATGCTTACTTAAAATTTGATAAAGACAAAATTGATAAAAATTTTTTAAGTGTTCTTGACGGACAATTAGCTGAACATGG
TAATAAAATCATGCTTGAGCGGCAAAATTTTATTGATAAACTTGAAGTTCATGCAAAAAAAATCCATGAGCAACTTACTC
ATGGTAAAGAAAATTTAAAAATCATTTATAATCAAAATGTGAAAACTGACTTTTCAAAAGAATTATTGATCAGACAAGAC
CATGATATTTTTAGGCATCAAACATCGGTTGGCCCTCATCGTGACGATTTACAATTTTTTATCAATGAGATTAATGTTGC
TGATTTTGGTAGTCAAGGACAACAACGAACCGTTGCTCTCTCAATTAAATTAGCAGAAATTGATTTAATTTTTGAAGAGA
CTGGTGAGTATCCGATTTTACTTTTAGATGATGTCATGAGTGAATTAGACAATCATCGTCAACTTGATTTGATTGAAACA
AGTTTGGGTAAAACACAAACTTTTATAACTACAACTACTCTTGATCATCTTAAAAATTTACCTGAAAATCTGAGTATTTT
CCATGTTAATGCTGGAACCATTGAACAAGAGCAATAA

Domains

Predicted by InterProScan.

• RecF/RecN/SMC N terminal domain (SMC_N) (3-353)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
recF	Streptococcus pneumoniae R6	55	100	0.553
recF	Bacillus subtilis subsp. subtilis str. 168	45.69	97.207	0.444