Detailed information    

insolico Bioinformatically predicted

Overview

Name   nucA/comI   Type   Machinery gene
Locus tag   FGE23_RS06825 Genome accession   NZ_CP040672
Coordinates   1326039..1326476 (-) Length   145 a.a.
NCBI ID   WP_003156588.1    Uniprot ID   -
Organism   Bacillus amyloliquefaciens strain X030     
Function   cleavage of dsDNA into ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 1321039..1331476
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FGE23_RS19950 - 1321633..1321761 (-) 129 Protein_1292 hypothetical protein -
  FGE23_RS06790 - 1321906..1323108 (+) 1203 WP_146276088.1 GTP-binding protein -
  FGE23_RS06795 - 1323173..1324309 (+) 1137 WP_146276090.1 zinc-dependent alcohol dehydrogenase -
  FGE23_RS06800 - 1324324..1324758 (+) 435 WP_021494203.1 RDD family protein -
  FGE23_RS06805 - 1324876..1325151 (+) 276 WP_369719109.1 YckD family protein -
  FGE23_RS20260 - 1325255..1325446 (+) 192 WP_071392145.1 family 1 glycosylhydrolase -
  FGE23_RS06815 - 1325371..1325600 (+) 230 Protein_1298 family 1 glycosylhydrolase -
  FGE23_RS06820 nin/comJ 1325619..1326017 (-) 399 WP_077721770.1 competence protein ComJ Regulator
  FGE23_RS06825 nucA/comI 1326039..1326476 (-) 438 WP_003156588.1 NucA/NucB deoxyribonuclease domain-containing protein Machinery gene
  FGE23_RS06830 hxlB 1326835..1327392 (-) 558 WP_077721772.1 6-phospho-3-hexuloisomerase -
  FGE23_RS06835 hxlA 1327389..1328024 (-) 636 WP_014304319.1 3-hexulose-6-phosphate synthase -
  FGE23_RS06840 - 1328256..1328618 (+) 363 WP_016936795.1 helix-turn-helix domain-containing protein -

Sequence

Protein


Download         Length: 145 a.a.        Molecular weight: 16072.35 Da        Isoelectric Point: 8.4850

>NTDB_id=366351 FGE23_RS06825 WP_003156588.1 1326039..1326476(-) (nucA/comI) [Bacillus amyloliquefaciens strain X030]
MKTLKALLLVLIIIAGAVAALIKGDLFSDNEQTVQKSDYDKVILFPSDRYPETAKHIKDAIKEGHSSICTIDRDGVHKRR
EQSLKHVPVKTGYDRDEWPMAVCKQGGNNASVEYISPADNRGAGSWVGHQLTNDPDGTRVLFKIK

Nucleotide


Download         Length: 438 bp        

>NTDB_id=366351 FGE23_RS06825 WP_003156588.1 1326039..1326476(-) (nucA/comI) [Bacillus amyloliquefaciens strain X030]
TTGAAAACATTAAAAGCACTGCTGCTTGTTCTTATCATCATTGCCGGAGCAGTCGCGGCCCTGATCAAGGGTGATCTTTT
CTCAGATAACGAGCAGACCGTTCAGAAGAGTGATTACGACAAAGTAATCCTATTTCCGTCCGATCGATATCCGGAAACAG
CAAAGCATATTAAGGACGCGATAAAAGAAGGGCATTCCAGCATATGCACCATTGACAGAGACGGAGTACATAAGCGGCGT
GAGCAATCTCTTAAACATGTGCCTGTCAAAACGGGATACGATAGGGATGAATGGCCGATGGCGGTTTGTAAACAGGGCGG
AAACAATGCCTCCGTAGAATATATTTCTCCGGCAGACAACCGCGGAGCCGGCTCTTGGGTCGGACACCAGCTTACCAATG
ATCCCGACGGAACGAGAGTATTATTTAAAATCAAGTAA

Domains

Predicted by InterproScan.

Deoxyribonuclease NucA/NucB (DNase_NucA_NucB)

(49-131)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  nucA/comI Bacillus subtilis subsp. subtilis str. 168

73.81

86.897

0.641

Multiple sequence alignment