Detailed information    

insolico Bioinformatically predicted

Overview

Name   ruvA   Type   Machinery gene
Locus tag   M594_RS09345 Genome accession   NZ_CP047883
Coordinates   1941884..1942477 (-) Length   197 a.a.
NCBI ID   WP_153210261.1    Uniprot ID   -
Organism   Streptococcus mitis strain S022-V3-A4     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1936884..1947477
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  M594_RS09320 (M594_09360) - 1937782..1938726 (+) 945 WP_000815623.1 magnesium transporter CorA family protein -
  M594_RS09325 (M594_09365) - 1938738..1939415 (+) 678 WP_000078011.1 DUF1129 domain-containing protein -
  M594_RS09330 (M594_09370) - 1939557..1940588 (+) 1032 WP_173876644.1 S66 family peptidase -
  M594_RS09335 (M594_09375) - 1940640..1941314 (-) 675 WP_153210263.1 CPBP family intramembrane glutamic endopeptidase -
  M594_RS09340 (M594_09380) - 1941311..1941874 (-) 564 WP_153210262.1 DNA-3-methyladenine glycosylase I -
  M594_RS09345 (M594_09385) ruvA 1941884..1942477 (-) 594 WP_153210261.1 Holliday junction branch migration protein RuvA Machinery gene
  M594_RS09350 (M594_09390) hexB 1942493..1944442 (-) 1950 WP_173876645.1 DNA mismatch repair endonuclease MutL Machinery gene
  M594_RS09355 (M594_09400) - 1944650..1945090 (+) 441 WP_173876646.1 LytTR family DNA-binding domain-containing protein -
  M594_RS09360 (M594_09405) - 1945087..1945545 (+) 459 WP_173876647.1 DUF3021 domain-containing protein -

Sequence

Protein


Download         Length: 197 a.a.        Molecular weight: 21726.20 Da        Isoelectric Point: 6.7343

>NTDB_id=366350 M594_RS09345 WP_153210261.1 1941884..1942477(-) (ruvA) [Streptococcus mitis strain S022-V3-A4]
MYEYLKGIITKITAKYIVLETNGIGYILHVANPYAYSGQVNQETQIYVHQVVREDAHLLYGFRSEDEKKLFLSLISVSGI
GPVSALAIIAADDNAGLVQAIETKNITYLTKFPKIGKKTAQQMVLDLEGKVVVASDALPAKVSVQTSAENQELEEAMEAM
LALGYKATELKKIKKFFEGTTDTAENYIKSALKMLVK

Nucleotide


Download         Length: 594 bp        

>NTDB_id=366350 M594_RS09345 WP_153210261.1 1941884..1942477(-) (ruvA) [Streptococcus mitis strain S022-V3-A4]
ATGTACGAATATTTAAAAGGAATCATTACCAAAATCACTGCTAAATACATTGTTCTTGAAACCAACGGTATCGGTTATAT
CCTGCATGTGGCTAATCCCTATGCCTACTCAGGTCAGGTCAACCAAGAAACTCAAATTTATGTGCATCAAGTCGTGCGTG
AGGACGCTCATCTGCTTTATGGATTTCGCTCAGAAGACGAGAAAAAGCTCTTTCTCAGTCTGATTTCGGTTTCTGGGATT
GGTCCTGTATCAGCTCTTGCTATTATCGCTGCCGATGACAATGCTGGCTTGGTTCAAGCCATTGAAACCAAGAATATCAC
CTACTTGACCAAGTTCCCTAAAATTGGCAAGAAAACAGCCCAGCAGATGGTGCTAGACTTGGAAGGAAAAGTCGTCGTGG
CTAGTGATGCCCTTCCTGCTAAGGTCTCAGTGCAAACCAGCGCTGAAAATCAAGAATTGGAAGAAGCTATGGAAGCCATG
TTGGCTCTGGGCTACAAGGCAACCGAGCTCAAGAAAATCAAGAAATTCTTTGAAGGAACGACAGATACAGCTGAGAACTA
TATCAAGTCGGCCCTTAAAATGTTGGTCAAATAG

Domains

Predicted by InterProScan.

Helix-hairpin-helix domain (HHH_5)

(71-127)

RuvA N terminal domain (RuvA_N)

(1-61)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ruvA Streptococcus pneumoniae R6

96.954

100

0.97
  ruvA Streptococcus pneumoniae D39

96.954

100

0.97
  ruvA Streptococcus pneumoniae TIGR4

96.954

100

0.97
  ruvA Bacillus subtilis subsp. subtilis str. 168

40.777

100

0.426

Multiple sequence alignment