Detailed information    

insolico Bioinformatically predicted

Overview


Name   rexA   Type   Machinery gene
Locus tag   M594_RS05165 Genome accession   NZ_CP047883
Coordinates   1039135..1042785 (+) Length   1216 a.a.
NCBI ID   WP_173876135.1    Uniprot ID   -
Organism   Streptococcus mitis strain S022-V3-A4     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context


Location: 1034135..1047785
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  M594_RS05155 (M594_05185) - 1034936..1035745 (-) 810 WP_173876133.1 Cof-type HAD-IIB family hydrolase -
  M594_RS05160 (M594_05190) rexB 1035863..1039138 (+) 3276 WP_173876134.1 ATP-dependent nuclease subunit B Machinery gene
  M594_RS05165 (M594_05195) rexA 1039135..1042785 (+) 3651 WP_173876135.1 helicase-exonuclease AddAB subunit AddA Machinery gene
  M594_RS05170 (M594_05200) - 1042803..1043981 (+) 1179 WP_173876136.1 hypothetical protein -
  M594_RS05175 (M594_05205) - 1044445..1045023 (+) 579 WP_004261232.1 sugar transferase -
  M594_RS05180 (M594_05210) - 1045062..1045763 (+) 702 WP_125451979.1 YveK family protein -
  M594_RS05185 (M594_05215) - 1045768..1046421 (+) 654 WP_125451981.1 CpsD/CapB family tyrosine-protein kinase -
  M594_RS05190 (M594_05220) - 1046457..1047557 (+) 1101 WP_173876137.1 EpsG family protein -

Sequence


Protein


Download         Length: 1216 a.a.        Molecular weight: 139964.75 Da        Isoelectric Point: 5.7348

>NTDB_id=366304 M594_RS05165 WP_173876135.1 1039135..1042785(+) (rexA) [Streptococcus mitis strain S022-V3-A4]
MKPIPFLTEEEIQKLQDAEANSSKEQKKTAEQIEAIYTSGQNILVSASAGSGKTFVMAERILDQLARGVEISQLFISTFT
VKAATELKERLEKKISQQIQESSDVDLKQHLGRQLADLPNAAIGTMDSFTQKFLGKHGYLIDIAPNFRILQNQSEQLLLK
NEVFHEVFEAHYQGKQKEKFSHLLKNFAGRGKDERGLRQQVYKIYDFLQSTSNPQKWLSESFLKGFEKADFSSEKEKLTE
QIQQALGDLESFFRYHLDNDAKKFAKAAYLENVQLILDEISSLNQESDSQAYQAVLARVVAISKEKNGRALTNASRKADL
KPLADAYNEERKTQFAKLGQLSDQITILDYQERYHGDTWELAKTFQSFMSDFVETYRERKRQENAFEFADISHYTIEILE
KFPQVREAYQERFHEVMVDEYQDTNHIQERMLELLSNGHNRFMVGDIKQSIYRFRQADPQIFNEKFQRYAQNPQKGKLIL
LKENFRSSSEVISATNDVFERLMDQEVGEINYDNMHQLVFANTKLTPNPDNKAEFLIYDKDDTSEEEEGQAETKLTGEMR
LVIKEILKLHKEQGVSFKEIALLTSSRSRNDQILLALSEYGIPVKTDGEQNNYLQSLEVQVMLDTLRVIHNPLQDYALVA
LMKSPMFGFDEDELARFSLQKAEDKVHENLYEKLVNAQKQVSSQKVLIHSALAEKLKQFMDILASWRLYAKTHSLYDLIW
KIYNDRFYYDYVGALPNGPARQANLYALALRADQFEKSNFKGLSRFIGMIDQVLEAQHDLASVAVAPPKDAIELMTIHKS
KGLEFPYVFILNMDQDFNKQDSMSEVILSRQNGIGVKYIAKMETGAVEDHYPKTIKLSIPSLTYRQNEEELQLASYSEQM
RLLYVAMTRAEKKLYLVGKGSREKLEAKEYPAAKNGKLNSNTRLQAKNFQDWMWAISKVFAKDHLNFSYRFVGEDQLTKE
AIGELETKSPLQDSSQADNRQSETIKEALEMLKEVEVYNTLHRAAIKLPSVQTPSQIKKFYEPVMDMEGVEIASKAQSVD
KKISFDLPDFSSKEKVTGAEIGSATHELMQRIDLSQRPTLASLTETLKQVQTSPAVRDKINLSKILAFFDTALGQEILAN
ANHLYREQPFSMLKRDQKSQEDFVVRGILDGYLLYEDKIVLFDYKTDRYNEPSQLIDRYRSQLALYGEALSRAYSIENIE
KYLILLGKDEVQVVKV

Nucleotide


Download         Length: 3651 bp        

>NTDB_id=366304 M594_RS05165 WP_173876135.1 1039135..1042785(+) (rexA) [Streptococcus mitis strain S022-V3-A4]
ATGAAGCCTATTCCCTTTTTAACTGAGGAGGAAATTCAAAAACTGCAAGATGCAGAAGCAAATTCGAGCAAGGAACAAAA
GAAAACTGCTGAGCAAATTGAAGCCATCTACACTTCTGGTCAGAATATCCTTGTCTCAGCGTCGGCTGGTTCTGGGAAAA
CCTTTGTTATGGCAGAGCGCATTCTGGACCAATTGGCGCGTGGTGTCGAAATTTCTCAACTCTTTATCTCAACATTTACA
GTTAAGGCAGCCACTGAGCTTAAGGAACGTTTGGAGAAAAAAATCAGCCAACAAATCCAAGAAAGTAGCGATGTTGACCT
CAAACAACACTTGGGTCGCCAGTTGGCAGACCTACCCAACGCTGCCATCGGAACCATGGACTCTTTCACACAAAAATTCC
TTGGTAAACATGGCTATCTGATTGATATTGCACCTAATTTCCGTATTTTACAAAACCAAAGCGAGCAACTCCTTCTTAAA
AACGAAGTCTTTCATGAGGTCTTTGAAGCCCATTATCAAGGTAAACAGAAAGAAAAGTTTAGTCATTTGCTGAAAAATTT
TGCAGGGCGTGGCAAGGACGAACGGGGGCTGCGCCAGCAAGTCTATAAAATTTATGACTTCCTCCAATCCACCAGTAATC
CTCAAAAGTGGCTGAGTGAATCTTTCTTAAAAGGATTTGAAAAAGCCGATTTTAGCAGTGAAAAAGAAAAACTGACTGAG
CAAATCCAGCAAGCCCTTGGGGATTTGGAAAGTTTTTTCCGTTATCATCTGGATAATGATGCCAAGAAATTTGCAAAGGC
TGCTTATCTAGAAAATGTTCAGTTGATTCTAGACGAAATTAGCTCCTTGAATCAGGAGTCCGATAGTCAGGCTTATCAAG
CAGTGCTTGCGCGTGTCGTCGCAATTTCGAAAGAGAAAAACGGTCGGGCCCTGACAAATGCCAGTCGTAAGGCTGATTTG
AAGCCACTGGCCGATGCCTACAATGAAGAAAGAAAGACCCAGTTTGCTAAACTAGGACAACTGTCAGACCAGATAACCAT
TCTCGACTATCAAGAACGTTATCATGGAGATACCTGGGAACTAGCTAAGACCTTCCAATCTTTCATGAGTGATTTTGTAG
AGACCTATCGTGAACGTAAGCGCCAGGAAAATGCTTTTGAATTCGCTGATATTAGTCATTACACCATTGAGATTTTAGAG
AAATTCCCGCAAGTTCGTGAGGCTTATCAGGAACGCTTCCATGAAGTCATGGTCGATGAGTATCAGGATACCAACCATAT
TCAAGAACGGATGCTAGAATTGCTGTCTAATGGTCACAATCGCTTTATGGTAGGGGATATCAAGCAGTCCATTTATCGTT
TCCGTCAGGCAGATCCGCAGATTTTCAATGAGAAATTCCAACGCTATGCGCAAAATCCACAAAAAGGTAAGCTGATTCTC
CTTAAAGAAAATTTCCGTAGTAGTTCAGAAGTGATATCAGCAACCAATGATGTTTTTGAACGCCTTATGGACCAAGAGGT
CGGCGAAATCAACTATGATAACATGCACCAGCTTGTTTTTGCCAATACCAAACTGACTCCTAATCCAGACAACAAGGCAG
AATTTCTCATCTACGATAAGGACGACACAAGTGAGGAAGAAGAGGGGCAGGCAGAAACGAAACTAACAGGCGAAATGCGC
CTGGTTATCAAGGAAATCCTTAAACTACATAAGGAACAAGGTGTTTCCTTTAAAGAAATCGCCCTTCTGACCTCCAGTCG
CAGTCGTAATGACCAGATCCTTCTCGCCCTGTCTGAGTACGGAATTCCTGTCAAAACTGACGGAGAGCAAAACAATTATC
TTCAATCCCTAGAAGTGCAAGTCATGCTAGACACCCTTCGTGTCATTCACAATCCTCTTCAAGACTATGCCTTGGTTGCC
CTTATGAAGTCTCCTATGTTTGGCTTTGATGAGGACGAGTTAGCACGTTTTTCCCTTCAGAAAGCAGAGGATAAAGTCCA
CGAAAATCTCTATGAGAAACTAGTAAATGCTCAAAAACAGGTAAGTAGCCAAAAAGTCTTGATTCACTCAGCTCTAGCTG
AGAAACTAAAGCAATTCATGGATATCTTGGCCTCTTGGCGCTTGTACGCCAAAACCCACTCCCTCTATGACTTGATTTGG
AAGATTTACAATGACCGTTTTTATTATGATTATGTTGGAGCTTTGCCAAATGGTCCTGCTAGACAGGCCAATCTCTATGC
CCTAGCACTGCGTGCTGATCAATTTGAAAAGAGCAATTTCAAGGGTTTGTCGCGTTTTATTGGTATGATTGATCAGGTTT
TAGAAGCCCAGCACGATTTGGCAAGCGTGGCTGTCGCACCGCCAAAAGATGCAATAGAGCTCATGACCATTCACAAGAGT
AAAGGGCTGGAGTTTCCTTACGTCTTTATCCTCAATATGGATCAAGACTTTAATAAGCAAGACAGCATGTCAGAGGTCAT
TCTCAGTCGTCAGAATGGTATTGGTGTCAAATATATTGCCAAAATGGAGACAGGAGCAGTGGAAGATCACTATCCTAAAA
CTATCAAACTCTCCATTCCTAGCTTGACCTATAGGCAGAATGAAGAGGAATTACAGCTAGCAAGCTATTCAGAGCAAATG
CGTCTGCTGTATGTTGCCATGACGAGGGCTGAGAAAAAACTCTATCTTGTCGGTAAGGGTTCTCGTGAAAAGCTGGAAGC
CAAGGAATATCCAGCAGCTAAAAATGGAAAACTAAATAGCAACACTAGACTTCAAGCCAAGAATTTCCAAGATTGGATGT
GGGCTATCAGTAAAGTATTTGCCAAGGATCATCTCAACTTTAGCTATCGTTTTGTTGGTGAAGATCAGCTGACTAAAGAA
GCTATCGGAGAATTGGAAACCAAAAGTCCTCTCCAAGATAGCTCTCAAGCAGATAACCGTCAGTCAGAAACCATCAAAGA
AGCCCTTGAAATGCTAAAAGAGGTGGAAGTTTATAATACTCTTCACCGCGCAGCTATTAAACTGCCAAGTGTTCAAACCC
CAAGTCAAATCAAGAAATTCTACGAACCAGTTATGGATATGGAGGGTGTCGAGATTGCTAGTAAAGCCCAGTCAGTGGAC
AAGAAAATCAGCTTTGATTTACCAGATTTTTCAAGCAAAGAAAAGGTAACAGGAGCTGAGATTGGTAGTGCTACCCACGA
ACTCATGCAGAGAATTGACCTCAGTCAGCGACCAACACTTGCTAGCCTGACAGAAACTCTCAAACAAGTTCAAACCAGCC
CAGCTGTCAGAGACAAGATTAATCTTTCGAAAATTCTTGCATTCTTTGACACAGCACTTGGTCAGGAAATTCTTGCTAAT
GCCAACCATCTTTATCGAGAGCAACCTTTCTCCATGCTCAAACGAGACCAAAAGAGTCAGGAAGATTTCGTTGTCCGTGG
TATCCTTGATGGCTATCTACTTTACGAAGACAAAATAGTTCTGTTCGACTATAAGACAGACCGCTATAATGAACCAAGTC
AACTCATAGACCGTTATCGTAGTCAGTTAGCCCTATATGGAGAAGCTTTATCTCGAGCCTATTCGATTGAAAATATTGAA
AAATACTTGATTTTACTCGGTAAAGACGAGGTTCAAGTTGTAAAAGTATAA


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rexA Streptococcus pneumoniae R6

94.243

100

0.942