Detailed information    

insolico Bioinformatically predicted

Overview

Name   rexB   Type   Machinery gene
Locus tag   M594_RS05160 Genome accession   NZ_CP047883
Coordinates   1035863..1039138 (+) Length   1091 a.a.
NCBI ID   WP_173876134.1    Uniprot ID   -
Organism   Streptococcus mitis strain S022-V3-A4     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1030863..1044138
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  M594_RS05135 (M594_05165) - 1031507..1032208 (+) 702 WP_084953615.1 response regulator transcription factor -
  M594_RS05140 (M594_05170) - 1032205..1033083 (+) 879 WP_020902867.1 sensor histidine kinase -
  M594_RS05145 (M594_05175) - 1033123..1033875 (-) 753 WP_084953430.1 ABC transporter permease -
  M594_RS05150 (M594_05180) - 1033886..1034794 (-) 909 WP_084953432.1 ATP-binding cassette domain-containing protein -
  M594_RS05155 (M594_05185) - 1034936..1035745 (-) 810 WP_173876133.1 Cof-type HAD-IIB family hydrolase -
  M594_RS05160 (M594_05190) rexB 1035863..1039138 (+) 3276 WP_173876134.1 ATP-dependent nuclease subunit B Machinery gene
  M594_RS05165 (M594_05195) rexA 1039135..1042785 (+) 3651 WP_173876135.1 helicase-exonuclease AddAB subunit AddA Machinery gene
  M594_RS05170 (M594_05200) - 1042803..1043981 (+) 1179 WP_173876136.1 hypothetical protein -

Sequence

Protein


Download         Length: 1091 a.a.        Molecular weight: 124419.07 Da        Isoelectric Point: 5.4184

>NTDB_id=366303 M594_RS05160 WP_173876134.1 1035863..1039138(+) (rexB) [Streptococcus mitis strain S022-V3-A4]
MKLLYTDIRTSLTEILTREAEELVAVGKRVFYIAPNSLSFEKERAVLECLSQQASFAITVTRFAQMARYLILNDLPAKTS
LDDIGLGMAFYKCLAELDPKDLRVYGAIKQDPQFIQQLIELYHEMTKAQMSFLDLESLTDEDKRADLLLIFEKVTAYLNQ
GQLAQGSQLSHLIEAIENDKVSSDFTQIALVIDGFTRFSAEEERIVDLLHGKGVEIVIGAYASKKAYTSPFAEGNLYQAS
VEFLHHLAAKYQTPAQDCSQTHEKMDSFDKASRLLESSYDFSELALDVDEKDRENLQIWSCLTQKEELELVARNIRQKLH
ENSDLSYKHFRILLGDVASYQLSLKTIFAQYQIPFYLGRSESMAHHPLTQFVESILALKRYRFRQEDLINLLRTGLYTDL
NQADIDAFEQYIRYLGINGLPAFQQSFTKSHHGKFNLERLNALRLQIVAPLETLFVSRKQKAENLLQKWNSFLKEGAVTK
QLQDLTATMEALEQERQAEVWKAFCHVLEQFATVFAGSQVSLEDFLALLNSGMSLSQYRTIPATVDTVLVQSYDLIAPLT
SDFVYAIGLTQDNLPKIAQNTSLLTDEERQSLNQATEDGAQLLIASSENLKKNRYTMLSLVNSARKQLVLSAPSLFNESE
SKESAYLQELVHFGFSRKEKRMNHKGLSKEDMGSYHSLLSSLVAYHQQSETSENEQDLTFIKVLARVMGKKLDQQGLENP
ALPTSPSSKPLTKDTLQALYPAEQEFYLSTSGLTEFYRNQYSYFLRYVLGLQEELRLRPDARSHGNFLHRIFERALQLPD
EDSFDKRLEQAIQETSQEREFEAIYQESLEAQFTKEVLLDVARTTGHILRHNPAIETIKEEANFGGKEQAFIQLDNGRSV
FVRGKVDRIDRLKADGAIGVVDYKSSLTQFQFPHFFNGLNSQLPTYLAALKREGEENFFGAMYLEMAEPVQSLMAVKSLA
GAVVEASKSMKYQGLFLEKESSHLGEFYNKNKANQLTDEEFQLLLDYNAHLYKKAAEKILAGQFAINPYTENGRSIAPYV
QQHQAITGFEANYHLGQARFLEKLDLADGKRLVGEKLKQAWFEKIREELNR

Nucleotide


Download         Length: 3276 bp        

>NTDB_id=366303 M594_RS05160 WP_173876134.1 1035863..1039138(+) (rexB) [Streptococcus mitis strain S022-V3-A4]
ATGAAATTACTTTATACTGATATTCGGACTTCTTTGACTGAAATTCTAACCAGAGAGGCGGAGGAGCTAGTTGCTGTGGG
CAAGCGGGTCTTCTACATCGCTCCCAACTCTCTTTCTTTTGAAAAGGAACGTGCCGTGCTGGAATGCTTGTCCCAGCAGG
CTTCTTTTGCGATTACTGTCACGCGCTTTGCGCAGATGGCTCGTTATCTGATTTTAAATGATTTGCCTGCCAAGACTAGT
CTAGATGACATCGGTCTTGGGATGGCCTTTTACAAATGCCTGGCCGAACTTGATCCTAAGGATTTACGTGTTTATGGAGC
TATCAAGCAGGATCCCCAATTTATCCAGCAGTTGATTGAGCTTTACCACGAGATGACCAAAGCTCAGATGAGTTTTTTGG
ACTTGGAGAGTTTGACGGATGAGGACAAGAGGGCCGATTTACTCTTGATTTTTGAGAAGGTAACGGCCTATCTAAATCAA
GGACAATTAGCTCAGGGAAGTCAGTTATCCCACTTGATTGAGGCTATTGAGAATGACAAAGTTAGTAGTGATTTTACTCA
AATCGCCTTGGTTATTGATGGATTTACCCGTTTTTCTGCTGAGGAAGAGCGAATTGTGGACTTACTTCATGGCAAGGGTG
TTGAGATTGTCATTGGAGCCTATGCTAGTAAGAAAGCCTATACCAGCCCATTCGCTGAAGGCAATCTCTATCAAGCCAGT
GTGGAGTTTCTCCATCATTTAGCTGCTAAATACCAAACGCCTGCTCAGGACTGTTCTCAAACTCATGAGAAGATGGATAG
CTTTGACAAGGCCTCTCGTTTGTTGGAGTCTTCTTATGACTTTTCAGAACTCGCTTTGGATGTCGATGAGAAGGATCGTG
AAAACTTACAAATCTGGTCTTGTTTGACGCAAAAGGAGGAGTTGGAGCTAGTAGCCCGTAACATTCGTCAGAAATTGCAT
GAGAACTCAGACCTGAGCTACAAGCATTTTCGGATTCTCTTGGGGGATGTAGCTTCTTACCAGTTATCGCTGAAAACCAT
TTTTGCCCAGTATCAGATTCCTTTCTATCTTGGTAGAAGCGAATCCATGGCGCACCATCCCTTGACTCAGTTTGTAGAGT
CTATTTTGGCTTTAAAACGCTATCGTTTCCGTCAGGAGGATTTGATAAACCTTCTTAGAACAGGTCTGTATACCGATCTT
AATCAGGCTGATATTGATGCTTTTGAACAATATATCCGCTATCTTGGTATCAATGGCTTGCCAGCCTTTCAGCAATCCTT
CACCAAATCCCACCATGGAAAATTTAATTTGGAACGTTTAAATGCTCTTCGTCTGCAGATTGTAGCGCCTCTTGAGACCC
TCTTTGTCAGTCGAAAACAAAAGGCTGAAAATCTCTTGCAAAAGTGGAATTCTTTTCTAAAAGAAGGAGCGGTGACCAAG
CAGTTGCAAGACTTAACAGCCACCATGGAAGCCCTAGAGCAGGAAAGACAAGCCGAAGTTTGGAAGGCTTTCTGCCATGT
TTTAGAACAATTTGCAACTGTTTTTGCTGGTTCACAGGTTAGTCTGGAAGACTTCCTAGCCTTGCTCAATTCTGGAATGA
GTTTATCTCAGTATCGCACTATTCCAGCAACAGTGGACACCGTTCTGGTGCAGAGTTACGATTTGATTGCGCCCTTAACA
TCTGACTTTGTCTATGCCATTGGGCTGACTCAGGACAATTTACCAAAAATTGCGCAAAACACCAGTCTTTTGACAGACGA
AGAAAGACAGAGCCTAAACCAAGCGACAGAAGATGGGGCGCAATTGCTGATTGCTAGCAGTGAAAATCTCAAGAAAAATC
GCTACACTATGCTTTCCTTGGTCAATTCTGCTCGTAAGCAGTTGGTCTTGTCGGCTCCAAGCCTTTTTAACGAAAGTGAA
AGCAAGGAATCAGCTTATCTTCAAGAGCTAGTCCATTTTGGATTTAGCAGGAAAGAGAAGAGGATGAATCACAAAGGGCT
GTCTAAGGAAGATATGGGGTCATATCACAGTCTTTTGTCCAGTCTAGTTGCCTATCACCAGCAGAGCGAGACGAGTGAGA
ATGAGCAAGATTTGACCTTTATCAAGGTTCTAGCGCGTGTCATGGGTAAAAAACTAGACCAGCAAGGTTTGGAAAATCCA
GCCCTGCCAACCAGCCCGAGTAGCAAGCCCTTGACCAAGGATACCTTGCAAGCTCTCTATCCTGCAGAACAGGAATTTTA
CCTGTCTACGTCTGGTTTAACAGAGTTTTACCGTAACCAATACAGTTATTTCCTCCGTTATGTTCTAGGCTTACAGGAAG
AATTGCGCCTACGTCCAGATGCACGTAGTCACGGAAATTTCTTGCACCGTATTTTTGAACGTGCCTTGCAGTTGCCTGAC
GAAGATTCCTTTGACAAACGTCTAGAACAGGCTATCCAAGAAACCAGTCAAGAACGGGAATTTGAGGCTATTTATCAGGA
AAGTTTGGAAGCCCAGTTTACCAAAGAAGTTTTGCTTGATGTTGCACGGACGACTGGTCACATTCTCCGCCATAATCCAG
CCATCGAAACCATCAAAGAAGAAGCAAATTTCGGTGGGAAAGAGCAAGCCTTTATTCAATTGGATAATGGGCGCAGTGTC
TTTGTACGAGGTAAGGTTGACCGCATTGATCGATTGAAAGCTGATGGGGCGATAGGAGTAGTAGACTACAAGTCTAGTCT
AACTCAGTTCCAGTTTCCTCATTTCTTTAATGGGCTCAATTCCCAGTTGCCAACCTATCTAGCTGCCCTAAAAAGAGAAG
GGGAGGAGAACTTTTTCGGTGCTATGTACTTGGAAATGGCTGAGCCTGTTCAATCTCTGATGGCCGTTAAAAGTCTGGCA
GGTGCAGTAGTAGAAGCCAGCAAGTCTATGAAATACCAAGGACTCTTTTTAGAAAAAGAAAGCAGTCATTTGGGCGAATT
TTACAATAAAAACAAAGCTAATCAGCTGACGGATGAGGAATTCCAGCTCCTACTGGACTACAATGCCCATCTTTACAAGA
AAGCAGCAGAGAAGATTTTAGCAGGCCAGTTCGCCATCAATCCTTATACTGAAAATGGTAGAAGTATTGCCCCATACGTC
CAGCAACATCAGGCCATTACAGGCTTTGAAGCCAATTACCACTTAGGCCAAGCCCGTTTCCTAGAAAAATTGGATTTAGC
TGATGGTAAACGTCTGGTCGGAGAAAAACTTAAGCAAGCATGGTTTGAAAAAATAAGAGAGGAGTTGAATCGATGA

Domains

Predicted by InterProScan.

PD-(D/E)XK nuclease superfamily (PDDEXK_1)

(748-1030)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rexB Streptococcus pneumoniae R6

94.134

100

0.941