Detailed information    

insolico Bioinformatically predicted

Overview


Name   pptB   Type   Regulator
Locus tag   M594_RS01970 Genome accession   NZ_CP047883
Coordinates   390561..391610 (+) Length   349 a.a.
NCBI ID   WP_173875829.1    Uniprot ID   -
Organism   Streptococcus mitis strain S022-V3-A4     
Function   export ComS (predicted from homology)   
Competence regulation

Genomic Context


Location: 385561..396610
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  M594_RS01940 (M594_01965) - 386500..386742 (+) 243 WP_173875827.1 hypothetical protein -
  M594_RS01945 (M594_01970) - 386813..387445 (+) 633 WP_173875828.1 DJ-1/PfpI family protein -
  M594_RS01950 (M594_01975) dnaJ 387642..388778 (+) 1137 WP_136936942.1 molecular chaperone DnaJ -
  M594_RS01955 (M594_01980) - 389058..389345 (-) 288 WP_000777752.1 hypothetical protein -
  M594_RS01960 (M594_01985) - 389355..389765 (-) 411 WP_001278317.1 HIT family protein -
  M594_RS01965 (M594_01990) pptA 389833..390564 (+) 732 WP_050251578.1 ABC transporter ATP-binding protein Regulator
  M594_RS01970 (M594_01995) pptB 390561..391610 (+) 1050 WP_173875829.1 ABC transporter permease Regulator
  M594_RS01975 (M594_02000) - 391673..392002 (-) 330 WP_084947397.1 helicase BlpT -
  M594_RS01980 (M594_02005) comE/blpR 392298..393035 (+) 738 WP_173875830.1 response regulator transcription factor Regulator
  M594_RS01985 (M594_02010) - 393049..394398 (+) 1350 WP_173875831.1 sensor histidine kinase -
  M594_RS01990 (M594_02015) - 394467..394823 (+) 357 WP_120719177.1 hypothetical protein -
  M594_RS10085 - 395144..395224 (+) 81 WP_419991826.1 hypothetical protein -
  M594_RS01995 (M594_02025) - 395679..396083 (+) 405 WP_020903123.1 hypothetical protein -
  M594_RS02000 (M594_02030) blpZ 396129..396377 (+) 249 WP_000276505.1 immunity protein BlpZ -

Sequence


Protein


Download         Length: 349 a.a.        Molecular weight: 40516.68 Da        Isoelectric Point: 10.0604

>NTDB_id=366282 M594_RS01970 WP_173875829.1 390561..391610(+) (pptB) [Streptococcus mitis strain S022-V3-A4]
MKDLFLKRKQAFRKECLGYLRYVLNDHFVLFLLVLLGFLAYQYSQLLQHFPENHWPILLFVGITSVLLLLWGGIATYMEA
PDKLFLLVGEEEIKLHLKRQTGISLVFWLFVQTLFLLLFAPLFLAMGYGLPVFLVYVLLLGVGKYFLFRQKVSKFFTETG
LDWDYVISQESKRKQVLLRFFALFTQVKGISNSVKRRAYLDFILKAVQKVPGKIWQNLYLRSYLRNGDLFALSLRLLLLS
LLAQVFIEQAWIATAVVVLFNYLLLFQLLALYHAFDYQYLTQLFPLDKGQKEKGLQAVVRGLTSFVLLVELVIGLITFQE
KLALLALLGAGLVLLVLYLPYQVKRQMQD

Nucleotide


Download         Length: 1050 bp        

>NTDB_id=366282 M594_RS01970 WP_173875829.1 390561..391610(+) (pptB) [Streptococcus mitis strain S022-V3-A4]
ATGAAAGACTTGTTTTTAAAGAGAAAGCAGGCTTTTCGTAAGGAGTGTCTTGGTTATCTGCGCTATGTGCTCAATGACCA
CTTTGTCTTGTTCCTGCTTGTTCTGCTGGGCTTTCTAGCCTACCAGTACAGTCAACTCTTGCAACATTTTCCTGAAAATC
ATTGGCCTATTCTTTTGTTTGTAGGAATTACGTCTGTTTTACTTTTGCTTTGGGGAGGAATTGCTACCTATATGGAGGCT
CCAGACAAGCTCTTTCTCTTGGTCGGAGAAGAGGAAATCAAGCTCCATCTCAAGCGTCAAACTGGCATTTCCCTAGTCTT
TTGGCTCTTTGTCCAGACCCTTTTCTTGCTGTTATTTGCGCCTTTATTTTTGGCAATGGGCTATGGCTTGCCAGTTTTTC
TGGTCTATGTGCTTTTATTGGGGGTAGGAAAATATTTCCTCTTTCGTCAAAAGGTCAGCAAATTTTTCACTGAAACTGGA
CTGGACTGGGACTATGTCATTTCTCAAGAAAGCAAGCGTAAGCAAGTCTTGCTTCGTTTCTTTGCCCTCTTTACGCAGGT
AAAGGGAATTTCAAACAGCGTCAAGCGTCGTGCCTATCTGGACTTTATCCTAAAGGCTGTTCAGAAGGTTCCTGGGAAGA
TTTGGCAAAATCTCTATCTGCGTTCTTACTTGCGAAATGGAGATCTCTTTGCCCTCAGTCTCCGTCTTCTCTTGCTTTCT
TTGCTGGCGCAGGTTTTTATCGAGCAAGCTTGGATTGCGACAGCAGTTGTGGTTCTCTTTAACTACCTCCTGCTCTTCCA
GTTACTGGCCCTCTATCATGCCTTTGACTACCAGTATTTGACCCAACTCTTTCCACTTGACAAGGGGCAAAAGGAAAAAG
GCTTGCAGGCGGTAGTCCGAGGATTGACCAGTTTTGTTTTACTTGTGGAATTAGTTATTGGGTTGATTACCTTCCAAGAA
AAATTGGCTCTTCTAGCCTTGCTGGGTGCAGGTTTGGTTTTACTAGTCTTGTATTTGCCTTATCAGGTAAAACGTCAGAT
GCAGGACTAA


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pptB Streptococcus salivarius strain HSISS4

47.714

100

0.479

  pptB Streptococcus thermophilus LMD-9

46.857

100

0.47