Detailed information    

insolico Bioinformatically predicted

Overview

Name   recF   Type   Machinery gene
Locus tag   E3S59_RS10120 Genome accession   NZ_CP047867
Coordinates   2061228..2062340 (-) Length   370 a.a.
NCBI ID   WP_000775119.1    Uniprot ID   -
Organism   Staphylococcus aureus strain UP_419     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2056228..2067340
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  E3S59_RS10110 (E3S59_10110) gyrA 2056578..2059247 (-) 2670 WP_000819067.1 DNA gyrase subunit A -
  E3S59_RS10115 (E3S59_10115) gyrB 2059284..2061218 (-) 1935 WP_000255578.1 DNA topoisomerase (ATP-hydrolyzing) subunit B -
  E3S59_RS10120 (E3S59_10120) recF 2061228..2062340 (-) 1113 WP_000775119.1 DNA replication/repair protein RecF Machinery gene
  E3S59_RS10125 (E3S59_10125) yaaA 2062337..2062582 (-) 246 WP_001789359.1 S4 domain-containing protein YaaA -
  E3S59_RS10130 (E3S59_10130) dnaN 2062963..2064096 (-) 1134 WP_000969811.1 DNA polymerase III subunit beta -
  E3S59_RS10135 (E3S59_10135) dnaA 2064374..2065735 (-) 1362 WP_001290433.1 chromosomal replication initiator protein DnaA -
  E3S59_RS10140 (E3S59_10140) rpmH 2066466..2066603 (+) 138 WP_000240855.1 50S ribosomal protein L34 -
  E3S59_RS10145 (E3S59_10145) rnpA 2066724..2067077 (+) 354 WP_001789343.1 ribonuclease P protein component -

Sequence

Protein


Download         Length: 370 a.a.        Molecular weight: 42443.49 Da        Isoelectric Point: 6.4362

>NTDB_id=366156 E3S59_RS10120 WP_000775119.1 2061228..2062340(-) (recF) [Staphylococcus aureus strain UP_419]
MKLNTLQLENYRNYDEVTLKCHPDVNILIGENAQGKTNLLESIYTLALAKSHRTSNDKELIRFNADYAKIEGELSYRHGT
MPLTMFITKKGKQVKVNHLEQSRLTQYIGHLNVVLFAPEDLNIVKGSPQIRRRFIDMELGQISAVYLNDLAQYQRILKQK
NNYLKQLQLGQKKDLTMLEVLNQQFAEYAMKVTDKRAHFIQELESLAKPIHAGITNDKEVLSLNYLPSLKFDYAQNEAAR
LEEIMSILSDNMQREKERGISLFGPHRDDISFDVNGMDAQTYGSQGQQRTTALSIKLAEIELMNIEVGEYPILLLDDVLS
ELDDSRQTHLLSTIQHKVQTFVTTTSVDGIDHEIMNNAKLYRINQGEIIK

Nucleotide


Download         Length: 1113 bp        

>NTDB_id=366156 E3S59_RS10120 WP_000775119.1 2061228..2062340(-) (recF) [Staphylococcus aureus strain UP_419]
ATGAAGTTAAATACACTCCAATTAGAAAATTATCGTAACTATGATGAGGTTACGTTGAAATGTCATCCTGACGTGAATAT
CCTCATTGGAGAAAATGCACAAGGAAAGACAAATTTACTTGAATCAATTTATACCTTAGCTTTAGCAAAAAGTCATAGAA
CGAGTAATGATAAGGAACTCATACGTTTTAATGCTGATTATGCTAAAATAGAAGGTGAGCTTAGTTATAGACACGGCACG
ATGCCATTAACAATGTTTATAACTAAAAAAGGTAAACAAGTCAAAGTGAATCACTTAGAGCAAAGTCGTCTAACTCAATA
TATTGGACACCTCAATGTGGTTCTATTTGCGCCAGAAGATTTGAATATTGTAAAAGGCTCTCCTCAAATAAGACGACGCT
TTATAGATATGGAGTTGGGCCAAATTTCTGCTGTTTACTTAAATGATTTAGCTCAATACCAACGTATTTTAAAGCAAAAG
AATAATTACTTAAAGCAGTTACAATTAGGCCAAAAAAAGGACTTAACAATGTTGGAAGTATTAAATCAGCAGTTTGCTGA
ATATGCAATGAAAGTAACTGATAAACGTGCACATTTTATTCAAGAGCTAGAGTCGTTAGCTAAACCGATTCATGCTGGTA
TCACAAATGATAAAGAAGTGTTGTCGCTAAATTATTTACCTAGTCTTAAATTTGATTATGCTCAAAATGAAGCGGCACGA
CTTGAAGAAATTATGTCTATTCTTAGCGATAATATGCAAAGAGAAAAAGAACGAGGCATTAGCTTATTCGGACCACATCG
AGATGATATAAGTTTTGATGTGAATGGCATGGATGCTCAAACATATGGTTCTCAAGGACAGCAACGTACAACGGCTTTGT
CCATTAAATTAGCTGAAATTGAGTTAATGAATATCGAAGTTGGGGAATATCCCATCTTATTATTAGACGATGTACTCAGT
GAATTAGATGATTCGCGTCAAACGCATTTATTAAGTACGATTCAGCATAAAGTACAAACATTTGTCACTACGACATCTGT
AGATGGTATTGATCATGAAATCATGAATAACGCTAAATTGTATCGTATTAATCAAGGTGAAATTATAAAGTAA

Domains

Predicted by InterProScan.

RecF/RecN/SMC N terminal domain (SMC_N)

(3-347)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recF Bacillus subtilis subsp. subtilis str. 168

58.649

100

0.586
  recF Streptococcus pneumoniae R6

49.33

100

0.497