Detailed information    

insolico Bioinformatically predicted

Overview

Name   oppD   Type   Regulator
Locus tag   SMUNN2025_RS08685 Genome accession   NC_013928
Coordinates   1798336..1799388 (-) Length   350 a.a.
NCBI ID   WP_002265822.1    Uniprot ID   -
Organism   Streptococcus mutans NN2025     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 1793336..1804388
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SMUNN2025_RS08670 (SmuNN2025_1697) gshAB 1793761..1796082 (+) 2322 WP_173298507.1 bifunctional glutamate--cysteine ligase GshA/glutathione synthetase GshB -
  SMUNN2025_RS08675 (SmuNN2025_1698) - 1796159..1796761 (-) 603 WP_012997947.1 nitroreductase family protein -
  SMUNN2025_RS08680 (SmuNN2025_1699) amiF 1797417..1798343 (-) 927 WP_002267002.1 ABC transporter ATP-binding protein Regulator
  SMUNN2025_RS08685 (SmuNN2025_1700) oppD 1798336..1799388 (-) 1053 WP_002265822.1 ABC transporter ATP-binding protein Regulator
  SMUNN2025_RS08690 (SmuNN2025_1701) - 1799398..1800429 (-) 1032 WP_002263989.1 ABC transporter permease -
  SMUNN2025_RS08695 (SmuNN2025_1702) - 1800440..1801354 (-) 915 WP_002262739.1 ABC transporter permease -
  SMUNN2025_RS08700 (SmuNN2025_1703) - 1801460..1803109 (-) 1650 WP_002262740.1 peptide ABC transporter substrate-binding protein -

Sequence

Protein


Download         Length: 350 a.a.        Molecular weight: 39231.78 Da        Isoelectric Point: 5.9292

>NTDB_id=36615 SMUNN2025_RS08685 WP_002265822.1 1798336..1799388(-) (oppD) [Streptococcus mutans NN2025]
MSKEKILQVNNLHVNFHTYAGEVKAIRDVSFYLEKGETLAIVGESGSGKSVTTRTLMGLSAKNAEIFGDIEFKGRNLNDL
KEEDWVHIRGNDISMIFQDPMTSLDPTMRIGLQIAEPIIKHEKVTKKEALKRALDMMEKVGIPNAQEHINDYPHQWSGGM
RQRAVIAIALATNPEILIADEPTTALDVTIQAQILHLMKEIQKNTDSSIIFITHDLGVVAGMADRVAVMYAGKIVEYGTV
DEVFYNPQHPYTWGLLNSMPTTNTASGSLHSIPGTPPDLLQPPQGDAFAPRNEFALDIDLKEEPPFFKVSDSHYAATWLL
DDRAPKITPPERILQRWRKWKSLQGEKHND

Nucleotide


Download         Length: 1053 bp        

>NTDB_id=36615 SMUNN2025_RS08685 WP_002265822.1 1798336..1799388(-) (oppD) [Streptococcus mutans NN2025]
ATGAGTAAGGAAAAAATTTTACAAGTCAATAACCTCCATGTCAATTTTCATACCTATGCAGGTGAAGTAAAAGCTATTCG
CGATGTTAGTTTTTATTTAGAAAAAGGGGAAACGCTGGCTATTGTTGGCGAATCTGGTTCTGGAAAGTCGGTGACCACAC
GAACTTTAATGGGCCTGTCAGCAAAGAATGCTGAGATTTTCGGAGATATTGAGTTTAAGGGACGCAATCTAAATGATTTG
AAGGAAGAAGACTGGGTTCATATTCGCGGAAATGATATTTCCATGATTTTCCAAGATCCTATGACAAGTTTGGATCCAAC
CATGCGTATTGGCCTTCAAATTGCTGAACCTATTATCAAGCATGAAAAAGTAACTAAAAAAGAAGCTCTCAAGCGGGCTC
TTGACATGATGGAAAAGGTTGGTATTCCCAATGCGCAAGAACACATCAACGATTATCCTCATCAGTGGTCAGGCGGTATG
CGCCAGCGCGCTGTCATAGCTATTGCTTTGGCAACTAATCCTGAAATCCTTATTGCAGATGAACCAACGACGGCTCTTGA
TGTTACCATTCAAGCACAAATTCTTCATTTAATGAAAGAAATCCAAAAGAATACTGACTCTTCCATTATCTTTATCACTC
ATGATTTGGGTGTCGTTGCAGGTATGGCAGACCGTGTTGCTGTTATGTATGCAGGCAAGATTGTGGAATATGGTACAGTA
GATGAGGTTTTCTACAACCCACAGCATCCCTACACTTGGGGGCTTCTCAATTCGATGCCTACAACTAATACAGCTTCAGG
CAGTTTGCATTCAATTCCCGGAACACCGCCTGACTTGTTGCAGCCCCCTCAAGGAGATGCTTTTGCTCCAAGAAATGAAT
TCGCTCTTGATATTGATCTTAAGGAGGAGCCGCCATTTTTTAAAGTTAGTGATTCACATTATGCTGCTACTTGGCTGTTA
GATGATCGTGCTCCTAAGATTACTCCGCCGGAAAGAATTTTGCAGCGTTGGAGAAAATGGAAGAGCTTACAGGGAGAAAA
GCATAATGACTGA

Domains

Predicted by InterproScan.

Oligopeptide/dipeptide transporter, C-terminal region (oligo_HPY)

(235-297)

ABC transporter (ABC_tran)

(27-183)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  oppD Streptococcus mutans UA159

99.143

100

0.991
  amiE Streptococcus salivarius strain HSISS4

54.728

99.714

0.546
  amiE Streptococcus thermophilus LMG 18311

54.441

99.714

0.543
  amiE Streptococcus thermophilus LMD-9

54.441

99.714

0.543

Multiple sequence alignment