Detailed information    

insolico Bioinformatically predicted

Overview

Name   vicX   Type   Regulator
Locus tag   SAPIG_RS00120 Genome accession   NC_017333
Coordinates   30092..30892 (+) Length   266 a.a.
NCBI ID   WP_001807805.1    Uniprot ID   -
Organism   Staphylococcus aureus subsp. aureus ST398     
Function   require for competence development (predicted from homology)   
Competence regulation

Genomic Context

Location: 25092..35892
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SAPIG_RS00105 (SAPIG0021) walK 25762..27588 (+) 1827 WP_000871607.1 cell wall metabolism sensor histidine kinase WalK -
  SAPIG_RS00110 (SAPIG0022) yycH 27581..28915 (+) 1335 WP_001060144.1 two-component system activity regulator YycH -
  SAPIG_RS00115 (SAPIG0023) - 28916..29704 (+) 789 WP_001104170.1 two-component system regulatory protein YycI -
  SAPIG_RS00120 (SAPIG0024) vicX 30092..30892 (+) 801 WP_001807805.1 MBL fold metallo-hydrolase Regulator
  SAPIG_RS00125 (SAPIG0025) adsA 31119..33440 (+) 2322 WP_000645765.1 LPXTG-anchored adenosine synthase AdsA -
  SAPIG_RS00130 (SAPIG0027) rlmH 33806..34285 (+) 480 WP_000704775.1 23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH -
  SAPIG_RS00135 (SAPIG0028) - 34531..34836 (+) 306 WP_000677988.1 hypothetical protein -

Sequence

Protein


Download         Length: 266 a.a.        Molecular weight: 30313.56 Da        Isoelectric Point: 6.5000

>NTDB_id=36614 SAPIG_RS00120 WP_001807805.1 30092..30892(+) (vicX) [Staphylococcus aureus subsp. aureus ST398]
MSRLIRMSVLASGSTGNATFVENEKGSLLVDVGLTGKKMEELFSQIDRNIKDLNGILVTHEHIDHIKGLGVLARKYQLPI
YANEKTWQAIEKKDSRIPMDQKFIFNPYETKSIAGFDVESFNVSHDAIDPQFYIFHNNYKKFTILTDTGYVSDRMKGMIR
GSDAFIFESNHDVDMLRMCRYPWKTKQRILGDMGHVSNEDAGHAMTDVITGNTKRIYLSHLSQDNNMKDLARMSVGQVLN
EHDIDTEKEVLLCDTDKAIPTPIYTI

Nucleotide


Download         Length: 801 bp        

>NTDB_id=36614 SAPIG_RS00120 WP_001807805.1 30092..30892(+) (vicX) [Staphylococcus aureus subsp. aureus ST398]
ATGAGCCGCTTGATACGCATGAGTGTATTAGCAAGTGGTAGTACAGGTAACGCCACTTTTGTAGAAAATGAAAAAGGTAG
TCTATTAGTTGATGTTGGTTTGACTGGCAAGAAAATGGAAGAATTGTTTAGTCAAATTGACCGTAATATTAAAGATTTAA
ATGGTATTTTAGTAACCCATGAACATATTGATCATATTAAAGGATTAGGTGTTTTGGCGCGTAAATATCAATTGCCAATT
TATGCGAATGAAAAGACTTGGCAGGCAATTGAAAAGAAAGATAGTCGCATTCCTATGGATCAGAAATTTATTTTTAATCC
TTATGAAACGAAATCTATTGCAGGTTTCGATGTTGAATCGTTTAACGTGTCACATGATGCGATAGATCCGCAATTTTATA
TTTTCCATAATAACTATAAGAAGTTTACGATTTTAACGGATACGGGTTACGTGTCTGATCGTATGAAAGGTATGATACGT
GGCAGCGATGCGTTTATTTTTGAGAGTAATCATGACGTCGATATGTTGAGAATGTGTCGTTATCCATGGAAGACGAAACA
ACGTATTTTAGGCGATATGGGTCATGTATCTAATGAGGATGCGGGTCATGCGATGACAGACGTGATTACAGGTAACACGA
AACGTATTTACTTATCGCATTTATCACAAGATAATAACATGAAAGATTTGGCGCGTATGAGTGTTGGCCAAGTATTGAAC
GAACACGATATTGATACGGAAAAAGAAGTATTGCTATGTGATACGGATAAAGCTATTCCAACGCCAATATATACAATATA
A

Domains

Predicted by InterProScan.

Metallo-beta-lactamase superfamily (Lactamase_B)

(14-220)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  vicX Streptococcus mutans UA159

49.027

96.617

0.474

Multiple sequence alignment