Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   FF960_RS11635 Genome accession   NZ_CP040625
Coordinates   2261284..2261679 (-) Length   131 a.a.
NCBI ID   WP_000932694.1    Uniprot ID   -
Organism   Staphylococcus aureus strain JKD6004-DR     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 2256284..2266679
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FF960_RS11610 (FF960_11625) thiE 2256884..2257525 (-) 642 WP_000483153.1 thiamine phosphate synthase -
  FF960_RS11615 (FF960_11630) thiM 2257527..2258318 (-) 792 WP_001108479.1 hydroxyethylthiazole kinase -
  FF960_RS11620 (FF960_11635) thiD 2258302..2259132 (-) 831 WP_000594959.1 bifunctional hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase -
  FF960_RS11625 (FF960_11640) tenA 2259125..2259814 (-) 690 WP_000396077.1 thiaminase II -
  FF960_RS11630 (FF960_11645) sceD 2260200..2260895 (-) 696 WP_000752008.1 lytic transglycosylase SceD -
  FF960_RS11635 (FF960_11650) ssb 2261284..2261679 (-) 396 WP_000932694.1 single-stranded DNA-binding protein Machinery gene
  FF960_RS11640 (FF960_11655) - 2261873..2262313 (+) 441 WP_000846746.1 YwpF-like family protein -
  FF960_RS11645 (FF960_11660) fabZ 2262372..2262812 (-) 441 WP_000447678.1 3-hydroxyacyl-ACP dehydratase FabZ -
  FF960_RS11650 (FF960_11665) murA 2262846..2264111 (-) 1266 WP_000358000.1 UDP-N-acetylglucosamine 1-carboxyvinyltransferase -
  FF960_RS11655 (FF960_11670) - 2264222..2264455 (-) 234 WP_000384523.1 DUF1146 family protein -
  FF960_RS11660 (FF960_11675) - 2264587..2264679 (-) 93 WP_001790611.1 hypothetical protein -
  FF960_RS11665 (FF960_11680) - 2265017..2265421 (-) 405 WP_001094394.1 F0F1 ATP synthase subunit epsilon -

Sequence

Protein


Download         Length: 131 a.a.        Molecular weight: 15042.09 Da        Isoelectric Point: 5.6824

>NTDB_id=365969 FF960_RS11635 WP_000932694.1 2261284..2261679(-) (ssb) [Staphylococcus aureus strain JKD6004-DR]
MLNKIVIVGRLTKDAQIFEKEDRKIATFCVATHRNYKDENGEIVCDYLFCKAFGKLASNIEKYTNQGTLVGITGQMRSRK
YDKDGQTHFVTELYVETIKFMSPKSQNNEILSDSILDIDSQNIDNHDLLEI

Nucleotide


Download         Length: 396 bp        

>NTDB_id=365969 FF960_RS11635 WP_000932694.1 2261284..2261679(-) (ssb) [Staphylococcus aureus strain JKD6004-DR]
ATGCTAAATAAAATCGTAATTGTCGGGAGACTGACGAAAGACGCACAAATATTTGAAAAGGAGGATAGAAAAATTGCAAC
GTTTTGTGTTGCAACGCACCGAAATTATAAAGATGAAAATGGAGAAATCGTCTGTGATTACTTATTCTGTAAAGCATTTG
GCAAGTTAGCTTCTAATATAGAAAAATATACTAATCAAGGTACATTGGTTGGTATAACTGGTCAAATGAGATCAAGAAAG
TATGATAAAGACGGACAAACACACTTTGTCACTGAATTATATGTTGAAACAATAAAATTTATGTCCCCTAAATCCCAAAA
TAATGAAATTCTCTCAGATAGTATTTTAGATATTGACTCTCAAAATATAGATAATCATGACTTATTAGAAATTTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-101)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Staphylococcus aureus N315

100

100

1
  ssb Staphylococcus aureus MW2

99.237

100

0.992

Multiple sequence alignment