Detailed information    

insolico Bioinformatically predicted

Overview

Name   comGF   Type   Machinery gene
Locus tag   FF957_RS08005 Genome accession   NZ_CP040619
Coordinates   1609039..1609536 (-) Length   165 a.a.
NCBI ID   WP_138642962.1    Uniprot ID   -
Organism   Staphylococcus aureus strain J01     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1604039..1614536
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FF957_RS07980 (FF957_07980) gcvPB 1604201..1605673 (-) 1473 WP_000202193.1 aminomethyl-transferring glycine dehydrogenase subunit GcvPB -
  FF957_RS07985 (FF957_07985) gcvPA 1605666..1607012 (-) 1347 WP_000019687.1 aminomethyl-transferring glycine dehydrogenase subunit GcvPA -
  FF957_RS07990 (FF957_07990) gcvT 1607032..1608123 (-) 1092 WP_000093349.1 glycine cleavage system aminomethyltransferase GcvT -
  FF957_RS07995 (FF957_07995) - 1608282..1608806 (-) 525 WP_001015117.1 shikimate kinase -
  FF957_RS08000 (FF957_08000) - 1608796..1608942 (-) 147 WP_001789879.1 hypothetical protein -
  FF957_RS08005 (FF957_08005) comGF 1609039..1609536 (-) 498 WP_138642962.1 competence type IV pilus minor pilin ComGF Machinery gene
  FF957_RS08010 (FF957_08010) comGE 1609454..1609753 (-) 300 WP_000844413.1 hypothetical protein Machinery gene
  FF957_RS08015 (FF957_08015) comGD 1609740..1610186 (-) 447 WP_001790850.1 competence type IV pilus minor pilin ComGD Machinery gene
  FF957_RS08020 (FF957_08020) comGC 1610164..1610475 (-) 312 WP_000472256.1 competence type IV pilus major pilin ComGC Machinery gene
  FF957_RS08025 (FF957_08025) comGB 1610489..1611559 (-) 1071 WP_000775708.1 competence type IV pilus assembly protein ComGB Machinery gene
  FF957_RS08030 (FF957_08030) comGA 1611531..1612505 (-) 975 WP_000697228.1 competence type IV pilus ATPase ComGA Machinery gene
  FF957_RS08035 (FF957_08035) - 1612557..1613180 (-) 624 WP_001223008.1 MBL fold metallo-hydrolase -
  FF957_RS08040 (FF957_08040) - 1613177..1613506 (-) 330 WP_001018871.1 MTH1187 family thiamine-binding protein -
  FF957_RS08045 (FF957_08045) - 1613506..1614492 (-) 987 WP_000161314.1 ROK family glucokinase -

Sequence

Protein


Download         Length: 165 a.a.        Molecular weight: 19180.88 Da        Isoelectric Point: 10.1558

>NTDB_id=365816 FF957_RS08005 WP_138642962.1 1609039..1609536(-) (comGF) [Staphylococcus aureus strain J01]
MILSKVTNKYVLFQKIPLLIKRHVYSINVKAFSLIEMLVAMMVISITLLIVPDLIRLSKTFLIESRDLTTVDFEFFSRDI
LDDFKGVDRNDIEIRQHRIILHKGEEMIEYKLINNKIIKVVNDRGNITMINNVTAFTANIYYKSIIKITITVKVGTNVQT
KTIYV

Nucleotide


Download         Length: 498 bp        

>NTDB_id=365816 FF957_RS08005 WP_138642962.1 1609039..1609536(-) (comGF) [Staphylococcus aureus strain J01]
ATGATATTAAGCAAAGTGACCAACAAATATGTGCTATTTCAAAAAATACCACTTCTTATCAAAAGACATGTATACAGTAT
TAATGTCAAAGCTTTTTCGCTCATTGAAATGTTAGTAGCGATGATGGTTATAAGTATAACTTTACTAATTGTTCCAGACT
TAATTAGACTTAGTAAAACTTTTCTAATTGAAAGTAGGGATTTAACAACTGTAGATTTCGAATTTTTCTCAAGAGATATT
CTAGATGATTTTAAAGGAGTAGATAGAAACGATATTGAAATTAGGCAACACCGTATCATTTTACATAAAGGTGAAGAAAT
GATCGAATACAAATTAATTAATAATAAAATTATTAAAGTTGTAAATGACAGAGGAAATATAACAATGATTAATAATGTTA
CAGCATTTACTGCAAATATCTACTATAAATCCATTATTAAAATAACGATAACAGTTAAAGTCGGTACAAATGTGCAGACT
AAAACTATTTATGTATAA

Domains

Predicted by InterproScan.

Putative Competence protein ComGF (ComGF)

(67-155)

Prokaryotic N-terminal methylation motif (N_methyl)

(28-51)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comGF Staphylococcus aureus MW2

99.394

100

0.994
  comGF Staphylococcus aureus N315

95.758

100

0.958

Multiple sequence alignment