Detailed information    

insolico Bioinformatically predicted

Overview

Name   ctsX   Type   Machinery gene
Locus tag   FBF22_RS07085 Genome accession   NZ_CP040618
Coordinates   1399260..1399847 (-) Length   195 a.a.
NCBI ID   WP_002884783.1    Uniprot ID   -
Organism   Campylobacter sp. CFSAN093260     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1394260..1404847
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FBF22_RS07065 (FBF22_07080) - 1395008..1395772 (+) 765 WP_002851318.1 TIGR02757 family protein -
  FBF22_RS07070 (FBF22_07085) - 1395776..1396546 (+) 771 WP_002873601.1 TSUP family transporter -
  FBF22_RS07075 (FBF22_07090) ctsF 1396533..1397714 (-) 1182 WP_002873600.1 type II secretion system F family protein Machinery gene
  FBF22_RS07080 (FBF22_07095) ctsE 1397711..1399270 (-) 1560 WP_032582256.1 GspE/PulE family protein Machinery gene
  FBF22_RS07085 (FBF22_07100) ctsX 1399260..1399847 (-) 588 WP_002884783.1 hypothetical protein Machinery gene
  FBF22_RS07090 (FBF22_07105) ctsP 1399851..1400459 (-) 609 WP_002851464.1 ATP-binding protein Machinery gene
  FBF22_RS07095 (FBF22_07110) ctsD 1400452..1401864 (-) 1413 WP_002871859.1 pilus (MSHA type) biogenesis protein MshL Machinery gene
  FBF22_RS07100 (FBF22_07115) ctsR 1401842..1402153 (-) 312 WP_002855438.1 hypothetical protein Machinery gene

Sequence

Protein


Download         Length: 195 a.a.        Molecular weight: 23283.36 Da        Isoelectric Point: 9.9100

>NTDB_id=365794 FBF22_RS07085 WP_002884783.1 1399260..1399847(-) (ctsX) [Campylobacter sp. CFSAN093260]
MQERIKELELRYKYFLLKKYLKYLLLIILISVIAFCFFVLMQKYNKQKNIYLQAIEHKKHLEQKILQAQILQEKNKISRE
KLYKELEEVKAVQENTHISKIEIDSKILNISDLKKSFYQNPSYEKALNLAKKYFDIKAYQKTIFWALKANELDKQKQDSW
LIFAQAKRALGEEKEAQSALDAYINYYGLIELGGK

Nucleotide


Download         Length: 588 bp        

>NTDB_id=365794 FBF22_RS07085 WP_002884783.1 1399260..1399847(-) (ctsX) [Campylobacter sp. CFSAN093260]
ATGCAAGAAAGAATTAAAGAGCTTGAGCTTAGGTATAAATACTTTTTACTTAAAAAATATTTAAAATATTTATTATTAAT
TATTCTAATATCAGTAATAGCATTTTGTTTTTTTGTGCTAATGCAAAAATATAATAAGCAAAAAAATATTTATTTGCAAG
CTATTGAACATAAAAAGCATTTGGAGCAAAAGATTCTTCAAGCGCAAATTTTACAAGAAAAAAATAAGATTTCTAGGGAA
AAGTTATATAAAGAACTAGAAGAAGTTAAAGCGGTGCAGGAAAATACACATATTAGCAAGATAGAAATTGATTCTAAAAT
TTTAAATATTTCTGATTTAAAAAAATCTTTTTATCAAAATCCAAGCTATGAAAAGGCATTAAATTTAGCTAAGAAGTATT
TTGATATTAAAGCTTATCAAAAGACAATATTTTGGGCTTTAAAAGCCAATGAACTTGACAAACAAAAACAAGATTCTTGG
CTGATTTTTGCTCAGGCTAAAAGAGCTTTAGGCGAAGAAAAAGAAGCTCAAAGTGCTTTAGATGCTTATATAAATTATTA
TGGTTTAATAGAATTAGGTGGAAAGTAG

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ctsX Campylobacter jejuni subsp. jejuni 81-176

98.974

100

0.99

Multiple sequence alignment