Detailed information    

insolico Bioinformatically predicted

Overview

Name   ctsR   Type   Machinery gene
Locus tag   FBF22_RS07100 Genome accession   NZ_CP040618
Coordinates   1401842..1402153 (-) Length   103 a.a.
NCBI ID   WP_002855438.1    Uniprot ID   A0AA44HLF8
Organism   Campylobacter sp. CFSAN093260     
Function   type II secretion system/type IV pilin; DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1396842..1407153
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FBF22_RS07080 (FBF22_07095) ctsE 1397711..1399270 (-) 1560 WP_032582256.1 GspE/PulE family protein Machinery gene
  FBF22_RS07085 (FBF22_07100) ctsX 1399260..1399847 (-) 588 WP_002884783.1 hypothetical protein Machinery gene
  FBF22_RS07090 (FBF22_07105) ctsP 1399851..1400459 (-) 609 WP_002851464.1 ATP-binding protein Machinery gene
  FBF22_RS07095 (FBF22_07110) ctsD 1400452..1401864 (-) 1413 WP_002871859.1 pilus (MSHA type) biogenesis protein MshL Machinery gene
  FBF22_RS07100 (FBF22_07115) ctsR 1401842..1402153 (-) 312 WP_002855438.1 hypothetical protein Machinery gene
  FBF22_RS07105 (FBF22_07120) nifJ 1402177..1405737 (-) 3561 WP_002884781.1 pyruvate:ferredoxin (flavodoxin) oxidoreductase -
  FBF22_RS07110 (FBF22_07125) - 1405830..1406471 (-) 642 WP_052777740.1 HAD family hydrolase -

Sequence

Protein


Download         Length: 103 a.a.        Molecular weight: 12475.38 Da        Isoelectric Point: 5.8722

>NTDB_id=365797 FBF22_RS07100 WP_002855438.1 1401842..1402153(-) (ctsR) [Campylobacter sp. CFSAN093260]
MCFSTLFAQDNFEEYFKLIDKENRINFNTLQNPFVNPTFEKLRHIKITAIMLDKVKIYDRWYKKGDMIDDAIIYEINTKE
IKFQYDNLEIAIQINKNDKININ

Nucleotide


Download         Length: 312 bp        

>NTDB_id=365797 FBF22_RS07100 WP_002855438.1 1401842..1402153(-) (ctsR) [Campylobacter sp. CFSAN093260]
TTGTGTTTTAGCACTTTGTTTGCACAAGATAATTTTGAAGAGTATTTTAAACTTATAGATAAAGAAAATCGTATAAATTT
TAATACTCTTCAAAACCCATTTGTGAATCCTACTTTTGAAAAATTAAGACATATTAAAATTACTGCAATTATGCTTGATA
AAGTAAAAATTTATGATCGATGGTATAAAAAAGGTGATATGATTGATGATGCTATAATATATGAAATAAATACTAAAGAG
ATTAAATTCCAATATGATAATTTAGAAATTGCAATCCAAATAAATAAAAATGATAAGATTAATATTAATTAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ctsR Campylobacter jejuni subsp. jejuni 81-176

100

100

1

Multiple sequence alignment