Detailed information    

insolico Bioinformatically predicted

Overview

Name   ctsR   Type   Machinery gene
Locus tag   FBF20_RS07530 Genome accession   NZ_CP040617
Coordinates   1456598..1456909 (-) Length   103 a.a.
NCBI ID   WP_015016496.1    Uniprot ID   A0A3X8SVA4
Organism   Campylobacter sp. CFSAN093259     
Function   type II secretion system/type IV pilin; DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1451598..1461909
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FBF20_RS07510 (FBF20_07565) ctsE 1452467..1454026 (-) 1560 WP_002864463.1 GspE/PulE family protein Machinery gene
  FBF20_RS07515 (FBF20_07570) ctsX 1454016..1454603 (-) 588 WP_002851370.1 membrane protein Machinery gene
  FBF20_RS07520 (FBF20_07575) ctsP 1454607..1455215 (-) 609 WP_002851464.1 ATP-binding protein Machinery gene
  FBF20_RS07525 (FBF20_07580) ctsD 1455208..1456620 (-) 1413 WP_002862130.1 pilus (MSHA type) biogenesis protein MshL Machinery gene
  FBF20_RS07530 (FBF20_07585) ctsR 1456598..1456909 (-) 312 WP_015016496.1 hypothetical protein Machinery gene
  FBF20_RS07535 (FBF20_07590) nifJ 1456933..1460493 (-) 3561 WP_002851382.1 pyruvate:ferredoxin (flavodoxin) oxidoreductase -
  FBF20_RS07540 (FBF20_07595) - 1460586..1461227 (-) 642 WP_002851542.1 HAD family hydrolase -

Sequence

Protein


Download         Length: 103 a.a.        Molecular weight: 12457.35 Da        Isoelectric Point: 5.8722

>NTDB_id=365770 FBF20_RS07530 WP_015016496.1 1456598..1456909(-) (ctsR) [Campylobacter sp. CFSAN093259]
MCFSTLFAQDNFEEYFKLIDKENRINFNTLQNPFVNPTFEKLRHIKITAIILDKVKIYDRWYKKGDMIDDAIIYEINTKE
IKFQYDNLEIAIQINKNDKININ

Nucleotide


Download         Length: 312 bp        

>NTDB_id=365770 FBF20_RS07530 WP_015016496.1 1456598..1456909(-) (ctsR) [Campylobacter sp. CFSAN093259]
TTGTGTTTTAGCACTTTGTTTGCACAAGATAATTTTGAAGAGTATTTTAAACTTATAGATAAAGAAAATCGTATAAATTT
TAATACTCTTCAAAACCCATTTGTGAATCCTACTTTTGAAAAATTAAGACATATTAAAATTACTGCAATTATACTTGATA
AAGTAAAAATTTATGATCGATGGTATAAAAAAGGTGATATGATTGATGATGCTATAATATATGAAATAAATACTAAAGAG
ATTAAATTCCAATATGATAATTTAGAAATTGCAATCCAAATAAATAAAAATGATAAGATTAATATTAATTAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A3X8SVA4

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ctsR Campylobacter jejuni subsp. jejuni 81-176

99.029

100

0.99

Multiple sequence alignment