Detailed information    

insolico Bioinformatically predicted

Overview

Name   ctsP   Type   Machinery gene
Locus tag   FBF20_RS07520 Genome accession   NZ_CP040617
Coordinates   1454607..1455215 (-) Length   202 a.a.
NCBI ID   WP_002851464.1    Uniprot ID   A0AB36GA54
Organism   Campylobacter sp. CFSAN093259     
Function   type II secretion system/type IV pilin; DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1449607..1460215
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FBF20_RS07495 (FBF20_07550) - 1449764..1450528 (+) 765 WP_002851318.1 TIGR02757 family protein -
  FBF20_RS07500 (FBF20_07555) - 1450532..1451296 (+) 765 WP_002851426.1 TSUP family transporter -
  FBF20_RS07505 (FBF20_07560) ctsF 1451289..1452470 (-) 1182 WP_002851165.1 type II secretion system F family protein Machinery gene
  FBF20_RS07510 (FBF20_07565) ctsE 1452467..1454026 (-) 1560 WP_002864463.1 GspE/PulE family protein Machinery gene
  FBF20_RS07515 (FBF20_07570) ctsX 1454016..1454603 (-) 588 WP_002851370.1 membrane protein Machinery gene
  FBF20_RS07520 (FBF20_07575) ctsP 1454607..1455215 (-) 609 WP_002851464.1 ATP-binding protein Machinery gene
  FBF20_RS07525 (FBF20_07580) ctsD 1455208..1456620 (-) 1413 WP_002862130.1 pilus (MSHA type) biogenesis protein MshL Machinery gene
  FBF20_RS07530 (FBF20_07585) ctsR 1456598..1456909 (-) 312 WP_015016496.1 hypothetical protein Machinery gene

Sequence

Protein


Download         Length: 202 a.a.        Molecular weight: 23742.78 Da        Isoelectric Point: 9.9955

>NTDB_id=365768 FBF20_RS07520 WP_002851464.1 1454607..1455215(-) (ctsP) [Campylobacter sp. CFSAN093259]
MSKIIPFREEIFHQINQILESQKAFIFLWGKSGSGKSVLLQRLAKKYNVDFINENFKDQSFLKEKIEFLISQGQSLIILD
EVGMYDYAMLESIRIYSDSISFVLSSHKKLNILKKEHFKSRLSACFKLKNISLLELDDYIKLKFGMNFSNKCLKFLQKIS
QGNLRYIDKTLKSFYEINSFFDKNKSQEYILKLSALENGLLR

Nucleotide


Download         Length: 609 bp        

>NTDB_id=365768 FBF20_RS07520 WP_002851464.1 1454607..1455215(-) (ctsP) [Campylobacter sp. CFSAN093259]
ATGAGTAAAATTATTCCATTTAGAGAAGAAATTTTTCATCAAATCAATCAAATTTTAGAAAGCCAAAAAGCTTTTATTTT
TTTATGGGGAAAAAGTGGTAGTGGTAAAAGTGTATTGTTGCAAAGATTGGCAAAAAAATATAATGTTGATTTTATTAATG
AAAATTTTAAAGATCAGAGTTTCTTAAAAGAAAAAATTGAGTTTTTGATTTCACAAGGTCAGAGTTTAATCATTCTTGAT
GAAGTGGGAATGTATGATTATGCAATGCTAGAAAGCATCAGGATTTATAGTGATTCTATAAGTTTTGTTTTAAGTTCTCA
TAAAAAGTTAAATATACTTAAAAAAGAGCATTTTAAAAGTCGTTTAAGTGCTTGTTTTAAATTGAAAAATATTAGTCTTT
TAGAACTTGATGATTATATTAAATTGAAATTTGGAATGAATTTTTCAAATAAATGTCTTAAGTTTTTACAAAAAATTTCT
CAAGGAAATTTAAGATATATTGATAAAACTTTAAAAAGTTTTTATGAGATAAATAGTTTTTTTGATAAAAACAAAAGTCA
AGAGTATATTTTAAAGCTTAGTGCTTTAGAGAATGGCTTATTAAGGTAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ctsP Campylobacter jejuni subsp. jejuni 81-176

99.505

100

0.995

Multiple sequence alignment