Detailed information    

insolico Bioinformatically predicted

Overview


Name   kpsS   Type   Regulator
Locus tag   FBF20_RS07185 Genome accession   NZ_CP040617
Coordinates   1384385..1385569 (-) Length   394 a.a.
NCBI ID   WP_002890768.1    Uniprot ID   -
Organism   Campylobacter sp. CFSAN093259     
Function   repress natural transformation (predicted from homology)   
Competence regulation

Genomic Context


Location: 1379385..1390569
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FBF20_RS07160 (FBF20_07220) fliL 1380533..1381069 (+) 537 WP_002855429.1 flagellar basal body-associated protein FliL -
  FBF20_RS07165 (FBF20_07225) acpS 1381069..1381416 (+) 348 WP_002825806.1 holo-ACP synthase -
  FBF20_RS07170 (FBF20_07230) - 1381417..1381836 (-) 420 WP_002855518.1 hypothetical protein -
  FBF20_RS07175 (FBF20_07235) - 1381833..1383194 (-) 1362 WP_002890764.1 cytochrome P450 -
  FBF20_RS07180 (FBF20_07240) - 1383191..1384312 (-) 1122 WP_002890766.1 hypothetical protein -
  FBF20_RS07185 (FBF20_07245) kpsS 1384385..1385569 (-) 1185 WP_002890768.1 capsule polysaccharide modification protein KpsS Regulator
  FBF20_RS07190 (FBF20_07250) - 1385566..1387635 (-) 2070 WP_002903881.1 capsular polysaccharide biosynthesis protein -
  FBF20_RS07195 (FBF20_07255) - 1387632..1388144 (-) 513 WP_002818256.1 cytidine diphosphoramidate kinase -
  FBF20_RS07200 (FBF20_07260) - 1388134..1388895 (-) 762 WP_002875234.1 CTP:phosphoglutamine cytidylyltransferase -
  FBF20_RS07205 (FBF20_07265) - 1388897..1389499 (-) 603 WP_002872737.1 gamma-glutamyl-CDP-amidate hydrolase -

Sequence


Protein


Download         Length: 394 a.a.        Molecular weight: 46854.60 Da        Isoelectric Point: 9.9369

>NTDB_id=365764 FBF20_RS07185 WP_002890768.1 1384385..1385569(-) (kpsS) [Campylobacter sp. CFSAN093259]
MRFSTKIKKEFSGKNVLLLQGPVGNFFHHLAIKMKKKQTKVFKLNFNGGDFFFYPSGTRCKCDEKDLENFYRDFFQSKKI
DAILMYNDCRIIHTKAIKVAKELGIEIWIFEEGYLRPYCITLEKDGVNANSSLPRDKNFYLSQNIFTKESIKEIPGGFKF
MAFDAFLYWLFAFILAPFFNNKLHHRTLYPFEFLFWFRSLYRKYLYKITEKKLNEKIYNLEKKYFLAILQVYSDTQIKYH
YKKSIEHFIEETILSFANHARAKSYLVFKHHPMDRGYKNYSKLINDLSQKYHVEGRVLYVHDTHLPVLLRKALGCITINS
TVGLSAILEGCPTKVCGNAFYDFEGLSYPKKLQFFWREAHAYKPNPVLVCNFKKYLLQTNQFNGNFYKNFFLDK

Nucleotide


Download         Length: 1185 bp        

>NTDB_id=365764 FBF20_RS07185 WP_002890768.1 1384385..1385569(-) (kpsS) [Campylobacter sp. CFSAN093259]
ATGAGATTTAGCACTAAAATTAAAAAAGAATTTAGCGGTAAAAATGTTTTACTCTTGCAAGGGCCTGTGGGAAATTTTTT
TCATCATCTTGCAATAAAAATGAAAAAAAAACAAACCAAAGTTTTTAAACTCAATTTTAACGGTGGAGATTTTTTTTTCT
ATCCTAGTGGAACGAGGTGTAAGTGCGATGAAAAAGATCTTGAAAATTTCTATAGAGATTTTTTTCAAAGCAAAAAAATC
GATGCTATTTTAATGTATAATGACTGTCGCATTATACATACTAAGGCTATTAAAGTGGCTAAAGAATTAGGAATTGAAAT
ATGGATTTTTGAAGAAGGATATTTAAGGCCTTATTGTATTACTTTGGAAAAAGATGGAGTGAATGCAAATTCTTCTTTAC
CGCGTGATAAAAATTTTTATCTTTCTCAAAATATTTTTACCAAAGAAAGCATAAAAGAAATTCCAGGTGGATTTAAATTT
ATGGCTTTTGATGCTTTTTTGTATTGGTTGTTTGCTTTTATTTTGGCTCCATTTTTTAACAACAAACTTCATCATCGCAC
TTTATATCCTTTTGAATTTTTATTTTGGTTTAGATCATTGTATAGAAAGTATCTTTATAAGATTACAGAAAAAAAACTAA
ATGAAAAGATTTATAATTTAGAAAAAAAGTACTTTTTGGCGATTTTACAAGTTTATAGCGATACGCAAATTAAATATCAT
TACAAAAAAAGCATAGAGCACTTTATAGAGGAAACCATACTTTCTTTTGCAAACCATGCAAGAGCTAAATCTTATCTAGT
TTTTAAACACCATCCCATGGATAGGGGCTATAAGAATTATTCTAAACTCATAAATGATTTAAGTCAAAAATATCATGTAG
AAGGAAGGGTTTTATATGTTCATGATACCCACTTGCCAGTTCTTTTAAGAAAGGCTTTGGGTTGTATTACTATAAATTCA
ACAGTAGGCCTTAGTGCTATTTTAGAAGGCTGTCCGACTAAGGTTTGTGGCAATGCTTTTTATGATTTTGAAGGCTTATC
TTATCCAAAAAAACTTCAATTTTTTTGGCGTGAAGCTCATGCTTATAAACCCAATCCTGTTTTAGTATGTAATTTTAAAA
AATATCTTTTACAAACTAATCAATTCAACGGCAATTTTTATAAAAATTTCTTTTTAGACAAATAA


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  kpsS Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

97.97

100

0.98


Multiple sequence alignment