Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprA   Type   Machinery gene
Locus tag   FBF20_RS03435 Genome accession   NZ_CP040617
Coordinates   636003..636776 (+) Length   257 a.a.
NCBI ID   WP_002858613.1    Uniprot ID   -
Organism   Campylobacter sp. CFSAN093259     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 631003..641776
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FBF20_RS03420 (FBF20_03445) - 631852..633786 (-) 1935 WP_002890708.1 ribonuclease R family protein -
  FBF20_RS03425 (FBF20_03450) ilvC 633905..634927 (+) 1023 WP_002858483.1 ketol-acid reductoisomerase -
  FBF20_RS03430 (FBF20_03455) - 634931..636013 (+) 1083 WP_002864866.1 divergent polysaccharide deacetylase family protein -
  FBF20_RS03435 (FBF20_03460) dprA 636003..636776 (+) 774 WP_002858613.1 DNA-processing protein DprA Machinery gene
  FBF20_RS03440 (FBF20_03465) ruvX 636773..637156 (+) 384 WP_002858579.1 Holliday junction resolvase RuvX -
  FBF20_RS03445 (FBF20_03470) - 637185..638024 (+) 840 WP_010891872.1 RsmB/NOP family class I SAM-dependent RNA methyltransferase -
  FBF20_RS03450 (FBF20_03475) msrA 638200..638697 (-) 498 WP_002890709.1 peptide-methionine (S)-S-oxide reductase MsrA -
  FBF20_RS03455 (FBF20_03480) ppa 638738..639256 (-) 519 WP_002867724.1 inorganic diphosphatase -
  FBF20_RS03460 (FBF20_03485) - 639266..639844 (-) 579 WP_002859580.1 adenylate kinase -
  FBF20_RS03465 (FBF20_03490) aspS 639841..641592 (-) 1752 WP_002890710.1 aspartate--tRNA ligase -

Sequence

Protein


Download         Length: 257 a.a.        Molecular weight: 28864.66 Da        Isoelectric Point: 7.0853

>NTDB_id=365751 FBF20_RS03435 WP_002858613.1 636003..636776(+) (dprA) [Campylobacter sp. CFSAN093259]
MASEILPDEFLELFKDLKKPPKKLHYKGNLSLLKQDKIAIIGSRRMSVYTKNCVFSLASMLKNAHLCVVSGGALGVDITA
SMAAMPNTIGIFANGLDQIYPRTNEKIIKQIYENALALSEYEDDYLPKNYDFLLRNRLVIALSKAVVVAQADIKSGSMQS
AKLALELNKPLYVLPQRLEESTGTNFLLKENKSKLICDFKEFVSEFASIDINQDEFLEFCKKGVSVDEALKIYGQKVYEY
ELEGKISIEGLFIRVLA

Nucleotide


Download         Length: 774 bp        

>NTDB_id=365751 FBF20_RS03435 WP_002858613.1 636003..636776(+) (dprA) [Campylobacter sp. CFSAN093259]
ATGGCAAGTGAAATTTTGCCTGATGAATTTTTAGAACTTTTTAAAGATTTAAAAAAGCCTCCTAAAAAATTACACTATAA
AGGAAATTTATCTTTATTAAAACAAGATAAAATCGCTATTATAGGTTCAAGGCGTATGAGTGTTTATACGAAAAATTGTG
TTTTTTCCTTAGCGAGTATGCTTAAAAATGCTCATCTTTGCGTGGTAAGTGGCGGTGCTTTGGGTGTGGATATCACCGCA
AGTATGGCAGCTATGCCAAATACTATAGGTATTTTTGCCAATGGTTTAGATCAAATTTATCCAAGAACTAATGAAAAAAT
CATTAAACAAATTTATGAAAATGCTTTAGCTTTAAGTGAATACGAAGATGATTATTTGCCAAAAAATTATGACTTTTTAC
TAAGAAATCGTTTGGTTATTGCTTTAAGCAAGGCCGTTGTGGTTGCACAAGCAGATATAAAAAGTGGTTCTATGCAGAGT
GCAAAACTTGCTTTAGAACTCAATAAACCTTTATATGTTTTACCACAAAGACTAGAAGAAAGCACAGGAACTAATTTTCT
TTTAAAGGAAAATAAATCAAAGTTAATTTGTGATTTTAAAGAATTTGTAAGTGAGTTTGCAAGTATAGATATAAATCAAG
ATGAGTTTTTAGAGTTTTGTAAAAAAGGTGTGAGTGTTGATGAGGCTTTAAAAATTTATGGACAAAAAGTTTATGAATAT
GAACTTGAGGGAAAAATTTCCATAGAAGGGCTTTTTATAAGGGTTTTAGCATGA

Domains

Predicted by InterproScan.

DNA recombination-mediator protein A (DNA_processg_A)

(9-195)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

98.054

100

0.981
  dprA Helicobacter pylori 26695

48.75

93.385

0.455

Multiple sequence alignment