Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprA   Type   Machinery gene
Locus tag   FBF19_RS03155 Genome accession   NZ_CP040615
Coordinates   601398..602171 (+) Length   257 a.a.
NCBI ID   WP_002866495.1    Uniprot ID   -
Organism   Campylobacter sp. CFSAN093256     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 596398..607171
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FBF19_RS03140 (FBF19_03155) - 597247..599181 (-) 1935 WP_012006667.1 ribonuclease R family protein -
  FBF19_RS03145 (FBF19_03160) ilvC 599300..600322 (+) 1023 WP_002866493.1 ketol-acid reductoisomerase -
  FBF19_RS03150 (FBF19_03165) - 600326..601408 (+) 1083 WP_002876692.1 divergent polysaccharide deacetylase family protein -
  FBF19_RS03155 (FBF19_03170) dprA 601398..602171 (+) 774 WP_002866495.1 DNA-processing protein DprA Machinery gene
  FBF19_RS03160 (FBF19_03175) ruvX 602168..602551 (+) 384 WP_002852281.1 Holliday junction resolvase RuvX -
  FBF19_RS03165 (FBF19_03180) - 602580..603419 (+) 840 WP_002866496.1 RsmB/NOP family class I SAM-dependent RNA methyltransferase -
  FBF19_RS03170 (FBF19_03185) msrA 603595..604092 (-) 498 WP_002858555.1 peptide-methionine (S)-S-oxide reductase MsrA -
  FBF19_RS03175 (FBF19_03190) ppa 604133..604651 (-) 519 WP_002852138.1 inorganic diphosphatase -
  FBF19_RS03180 (FBF19_03195) - 604661..605239 (-) 579 WP_002906185.1 adenylate kinase -
  FBF19_RS03185 (FBF19_03200) aspS 605236..606987 (-) 1752 WP_002871806.1 aspartate--tRNA ligase -

Sequence

Protein


Download         Length: 257 a.a.        Molecular weight: 28742.58 Da        Isoelectric Point: 7.6510

>NTDB_id=365723 FBF19_RS03155 WP_002866495.1 601398..602171(+) (dprA) [Campylobacter sp. CFSAN093256]
MASEILPDEFLELFKDLKKPPKKLHYKGNLSLLKQDKIAIIGSRRMSVYTKNCVFSLASMLKNAHLCVVSGGALGVDITA
SMAAMPNTIGIFANGLDQIYPRTNEKIIKQIYENALALSEYEDDYLPKNYDFLLRNRLVIALSKAVVVAQADIKSGSMQS
AKLALELNKPLYVLPQRLGESTGTNLLLKENKAKLICDFKEFVSEFASIDINQDEFLEFCKKGVSVDEALKIYGQKVYEY
ELEGKISIEGLFIRVLA

Nucleotide


Download         Length: 774 bp        

>NTDB_id=365723 FBF19_RS03155 WP_002866495.1 601398..602171(+) (dprA) [Campylobacter sp. CFSAN093256]
ATGGCAAGTGAAATTTTGCCTGATGAATTTTTAGAACTTTTTAAAGATTTAAAAAAGCCTCCTAAAAAATTACACTATAA
AGGAAATTTATCTTTATTAAAACAAGATAAAATTGCTATTATAGGTTCAAGGCGTATGAGTGTTTATACGAAAAATTGTG
TTTTTTCCTTAGCGAGTATGCTTAAAAATGCTCATCTTTGTGTGGTAAGTGGCGGTGCTTTGGGTGTGGATATCACCGCA
AGTATGGCGGCTATGCCAAATACTATAGGTATTTTTGCTAATGGTTTGGATCAAATTTATCCAAGAACTAATGAAAAAAT
CATTAAACAAATTTATGAAAATGCTTTGGCTTTAAGCGAATACGAAGATGATTATTTGCCAAAAAATTATGACTTTTTAC
TAAGAAATCGTTTGGTTATTGCTTTAAGTAAGGCCGTTGTAGTTGCACAAGCAGATATAAAAAGTGGTTCTATGCAAAGT
GCAAAACTTGCTTTAGAACTCAATAAACCTTTATATGTTTTACCGCAAAGACTAGGAGAAAGTACAGGGACTAATTTGCT
TTTAAAGGAAAATAAAGCAAAATTGATTTGTGATTTCAAAGAATTTGTAAGTGAGTTTGCAAGTATAGATATAAATCAAG
ATGAGTTTTTAGAGTTTTGTAAAAAAGGTGTGAGTGTTGATGAGGCTTTAAAAATTTATGGACAAAAAGTTTATGAATAT
GAACTTGAGGGAAAAATTTCCATAGAAGGGCTTTTTATAAGGGTTTTAGCATGA

Domains

Predicted by InterproScan.

DNA recombination-mediator protein A (DNA_processg_A)

(9-197)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

99.222

100

0.992
  dprA Helicobacter pylori 26695

49.167

93.385

0.459

Multiple sequence alignment