Detailed information    

insolico Bioinformatically predicted

Overview

Name   CJE0566   Type   Regulator
Locus tag   FBF19_RS02960 Genome accession   NZ_CP040615
Coordinates   559502..560152 (-) Length   216 a.a.
NCBI ID   WP_002855187.1    Uniprot ID   A0A3H9FWN6
Organism   Campylobacter sp. CFSAN093256     
Function   repress natural transformation (predicted from homology)   
Competence regulation

Genomic Context

Location: 554502..565152
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FBF19_RS02925 (FBF19_02945) - 554880..555884 (+) 1005 WP_002852264.1 membrane protein -
  FBF19_RS02930 (FBF19_02950) - 555881..556642 (+) 762 WP_002852328.1 TlyA family RNA methyltransferase -
  FBF19_RS02935 (FBF19_02955) - 556608..557462 (+) 855 WP_002872056.1 bifunctional riboflavin kinase/FAD synthetase -
  FBF19_RS02940 (FBF19_02960) cmoA 557449..558159 (+) 711 WP_079254426.1 carboxy-S-adenosyl-L-methionine synthase CmoA -
  FBF19_RS02945 (FBF19_02965) - 558149..558370 (-) 222 WP_002859102.1 EexN family lipoprotein -
  FBF19_RS02950 (FBF19_02970) - 558367..558801 (-) 435 WP_002868091.1 EexN family lipoprotein -
  FBF19_RS02955 (FBF19_02975) - 558859..559491 (-) 633 WP_002874216.1 trimeric intracellular cation channel family protein -
  FBF19_RS02960 (FBF19_02980) CJE0566 559502..560152 (-) 651 WP_002855187.1 DNA/RNA non-specific endonuclease Regulator
  FBF19_RS02965 (FBF19_02985) nth 560149..560775 (-) 627 WP_002852225.1 endonuclease III -
  FBF19_RS02970 (FBF19_02990) peb4 560856..561677 (+) 822 WP_002879177.1 peptidylprolyl isomerase PEB4 -
  FBF19_RS02975 (FBF19_02995) fbaA 561677..562741 (+) 1065 WP_002856965.1 class II fructose-bisphosphate aldolase -
  FBF19_RS02980 (FBF19_03000) - 562836..564278 (+) 1443 WP_002906136.1 MotA/TolQ/ExbB proton channel family protein -

Sequence

Protein


Download         Length: 216 a.a.        Molecular weight: 25505.26 Da        Isoelectric Point: 9.7361

>NTDB_id=365722 FBF19_RS02960 WP_002855187.1 559502..560152(-) (CJE0566) [Campylobacter sp. CFSAN093256]
MKIFIFLLTISLNIFALEPYKPSADFSSYFNNINCSQILDKFFYLNCYDYKLKGTKAVAYKVEASNLKDKQIKKRPRFED
DTNIPKKYRTTWSDYKNSGYTRGHTAPNASFSFSKAAQNSVFLMSNITPQIAQINNKIWNEIEQRERNLAFKFQSIEVLN
LVLYDKEPQYIKNRIAIPSFYVKIIKTPKFKECYQVPNHEVNDENIKQYQINCDKF

Nucleotide


Download         Length: 651 bp        

>NTDB_id=365722 FBF19_RS02960 WP_002855187.1 559502..560152(-) (CJE0566) [Campylobacter sp. CFSAN093256]
ATGAAAATTTTCATCTTTTTACTCACTATATCTCTTAATATTTTTGCCTTAGAACCTTACAAGCCTAGTGCTGATTTTTC
TTCTTATTTTAACAATATAAATTGCTCGCAAATCTTAGATAAGTTTTTTTATCTAAATTGCTATGATTATAAACTCAAAG
GCACAAAAGCCGTTGCTTATAAAGTAGAGGCTTCAAATTTGAAAGATAAACAAATCAAAAAACGCCCTCGCTTTGAAGAT
GATACAAATATACCTAAAAAATACCGCACTACTTGGAGTGATTATAAAAACAGTGGTTACACACGAGGACACACTGCACC
CAATGCTTCTTTTAGCTTTAGTAAAGCTGCTCAAAATTCAGTATTTTTAATGAGCAATATTACCCCACAAATTGCACAAA
TAAATAATAAAATTTGGAATGAAATCGAGCAAAGAGAAAGAAATTTGGCTTTCAAATTTCAAAGTATCGAAGTTTTAAAT
TTAGTACTTTACGATAAAGAACCACAATACATTAAAAACCGTATTGCTATACCAAGTTTTTATGTAAAAATTATTAAAAC
TCCGAAATTTAAAGAATGCTATCAAGTACCAAACCATGAAGTAAATGATGAAAATATTAAACAGTATCAAATAAATTGTG
ATAAATTTTAA

Domains

Predicted by InterproScan.

DNA/RNA non-specific endonuclease (Endonuclease_NS)

(34-215)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A3H9FWN6

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  CJE0566 Campylobacter jejuni RM1221

70.558

91.204

0.644
  CJE1441 Campylobacter jejuni RM1221

69.543

91.204

0.634

Multiple sequence alignment