Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprA   Type   Machinery gene
Locus tag   FBE87_RS03135 Genome accession   NZ_CP040613
Coordinates   594041..594814 (+) Length   257 a.a.
NCBI ID   WP_002868431.1    Uniprot ID   A0AAW5E9C5
Organism   Campylobacter sp. CFSAN093246     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 589041..599814
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FBE87_RS03120 (FBE87_03125) - 589890..591824 (-) 1935 WP_168977220.1 ribonuclease R family protein -
  FBE87_RS03125 (FBE87_03130) ilvC 591943..592965 (+) 1023 WP_100626005.1 ketol-acid reductoisomerase -
  FBE87_RS03130 (FBE87_03135) - 592969..594051 (+) 1083 WP_002859983.1 divergent polysaccharide deacetylase family protein -
  FBE87_RS03135 (FBE87_03140) dprA 594041..594814 (+) 774 WP_002868431.1 DNA-processing protein DprA Machinery gene
  FBE87_RS03140 (FBE87_03145) ruvX 594811..595194 (+) 384 WP_002852281.1 Holliday junction resolvase RuvX -
  FBE87_RS03145 (FBE87_03150) - 595223..596062 (+) 840 WP_079744478.1 RsmB/NOP family class I SAM-dependent RNA methyltransferase -
  FBE87_RS03150 (FBE87_03155) msrA 596238..596735 (-) 498 WP_002874288.1 peptide-methionine (S)-S-oxide reductase MsrA -
  FBE87_RS03155 (FBE87_03160) ppa 596776..597294 (-) 519 WP_002852138.1 inorganic diphosphatase -
  FBE87_RS03160 (FBE87_03165) - 597304..597882 (-) 579 WP_002868428.1 adenylate kinase -
  FBE87_RS03165 (FBE87_03170) aspS 597879..599630 (-) 1752 WP_168977221.1 aspartate--tRNA ligase -

Sequence

Protein


Download         Length: 257 a.a.        Molecular weight: 28848.66 Da        Isoelectric Point: 7.0853

>NTDB_id=365695 FBE87_RS03135 WP_002868431.1 594041..594814(+) (dprA) [Campylobacter sp. CFSAN093246]
MASEILPDEFLELFKDLKKPPKKLHYKGNLSLLKQDKIAIIGSRRMSVYTKNCVFSLASMLKNAHLCVVSGGALGVDITA
SMAAMPNTIGIFANGLDQIYPRTNEKIIKQIYENALALSEYEDDYLPKNYDFLLRNRLVIALSKAVVVAQADIKSGSMQS
AKLALELNKPLYVLPQRLEESTGTNFLLKENKAKLICDFKEFVSEFASIDINQDEFLEFCKKGVSVDEALKIYGQKVYEY
ELEGKISIEGLFIRVLA

Nucleotide


Download         Length: 774 bp        

>NTDB_id=365695 FBE87_RS03135 WP_002868431.1 594041..594814(+) (dprA) [Campylobacter sp. CFSAN093246]
ATGGCAAGTGAAATTTTGCCTGATGAATTTTTAGAACTTTTTAAAGATTTAAAAAAGCCTCCTAAAAAATTACACTATAA
AGGAAATTTATCTTTATTAAAACAAGATAAAATCGCTATTATAGGTTCAAGGCGTATGAGTGTTTATACGAAAAATTGTG
TTTTTTCCTTAGCGAGTATGCTTAAAAATGCTCATCTTTGCGTGGTAAGTGGCGGTGCTTTGGGTGTGGATATCACCGCA
AGTATGGCAGCTATGCCAAATACTATAGGTATTTTTGCTAATGGTTTAGATCAAATTTATCCAAGAACTAATGAAAAAAT
CATTAAACAAATTTATGAAAATGCTTTAGCTTTAAGTGAATACGAAGATGATTATTTGCCAAAAAATTATGACTTTTTAC
TAAGAAATCGTTTGGTTATTGCTTTAAGTAAGGCCGTTGTGGTTGCACAAGCAGATATAAAAAGTGGTTCTATGCAGAGT
GCAAAACTTGCTTTAGAACTCAATAAACCTTTATATGTTTTACCACAAAGACTAGAAGAAAGCACAGGAACTAATTTTCT
TTTAAAGGAAAATAAAGCAAAGTTAATTTGTGATTTTAAAGAATTTGTAAGTGAGTTTGCAAGTATAGATATAAATCAAG
ATGAATTTTTAGAGTTTTGTAAAAAAGGTGTGAGTGTTGATGAGGCTTTAAAAATTTATGGACAAAAAGTTTATGAATAT
GAACTTGAGGGAAAAATTTCCATAGAAGGGCTTTTTATAAGGGTTTTAGCATGA

Domains

Predicted by InterproScan.

DNA recombination-mediator protein A (DNA_processg_A)

(9-197)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

98.444

100

0.984
  dprA Helicobacter pylori 26695

49.167

93.385

0.459

Multiple sequence alignment