Detailed information    

insolico Bioinformatically predicted

Overview

Name   ctsR   Type   Machinery gene
Locus tag   FBE96_RS07190 Genome accession   NZ_CP040612
Coordinates   1418197..1418508 (-) Length   103 a.a.
NCBI ID   WP_002855438.1    Uniprot ID   A0AA44HLF8
Organism   Campylobacter sp. CFSAN093241     
Function   type II secretion system/type IV pilin; DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1413197..1423508
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FBE96_RS07170 (FBE96_07230) ctsE 1414066..1415625 (-) 1560 WP_011812800.1 GspE/PulE family protein Machinery gene
  FBE96_RS07175 (FBE96_07235) ctsX 1415615..1416202 (-) 588 WP_002851370.1 membrane protein Machinery gene
  FBE96_RS07180 (FBE96_07240) ctsP 1416206..1416814 (-) 609 WP_002851464.1 ATP-binding protein Machinery gene
  FBE96_RS07185 (FBE96_07245) ctsD 1416807..1418219 (-) 1413 WP_002871859.1 pilus (MSHA type) biogenesis protein MshL Machinery gene
  FBE96_RS07190 (FBE96_07250) ctsR 1418197..1418508 (-) 312 WP_002855438.1 hypothetical protein Machinery gene
  FBE96_RS07195 (FBE96_07255) nifJ 1418532..1422092 (-) 3561 WP_002871858.1 pyruvate:ferredoxin (flavodoxin) oxidoreductase -
  FBE96_RS07200 (FBE96_07260) - 1422185..1422826 (-) 642 WP_002871857.1 HAD family hydrolase -

Sequence

Protein


Download         Length: 103 a.a.        Molecular weight: 12475.38 Da        Isoelectric Point: 5.8722

>NTDB_id=365687 FBE96_RS07190 WP_002855438.1 1418197..1418508(-) (ctsR) [Campylobacter sp. CFSAN093241]
MCFSTLFAQDNFEEYFKLIDKENRINFNTLQNPFVNPTFEKLRHIKITAIMLDKVKIYDRWYKKGDMIDDAIIYEINTKE
IKFQYDNLEIAIQINKNDKININ

Nucleotide


Download         Length: 312 bp        

>NTDB_id=365687 FBE96_RS07190 WP_002855438.1 1418197..1418508(-) (ctsR) [Campylobacter sp. CFSAN093241]
TTGTGTTTTAGCACTTTGTTTGCACAAGATAATTTTGAAGAGTATTTTAAACTTATAGATAAAGAAAATCGTATAAATTT
TAATACTCTTCAAAACCCATTTGTGAATCCTACTTTTGAAAAATTAAGACATATTAAAATTACTGCAATTATGCTTGATA
AAGTAAAAATTTATGATCGATGGTATAAAAAAGGTGATATGATTGATGATGCTATAATATATGAAATAAATACTAAAGAG
ATTAAATTCCAATATGATAATTTAGAAATTGCAATCCAAATAAATAAAAATGATAAGATTAATATTAATTAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ctsR Campylobacter jejuni subsp. jejuni 81-176

100

100

1

Multiple sequence alignment