Detailed information    

insolico Bioinformatically predicted

Overview

Name   ctsP   Type   Machinery gene
Locus tag   FBE96_RS07180 Genome accession   NZ_CP040612
Coordinates   1416206..1416814 (-) Length   202 a.a.
NCBI ID   WP_002851464.1    Uniprot ID   A0AB36GA54
Organism   Campylobacter sp. CFSAN093241     
Function   type II secretion system/type IV pilin; DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1411206..1421814
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FBE96_RS07155 (FBE96_07215) - 1411363..1412127 (+) 765 WP_002851318.1 TIGR02757 family protein -
  FBE96_RS07160 (FBE96_07220) - 1412131..1412895 (+) 765 WP_002871861.1 TSUP family transporter -
  FBE96_RS07165 (FBE96_07225) ctsF 1412888..1414069 (-) 1182 WP_002868229.1 type II secretion system F family protein Machinery gene
  FBE96_RS07170 (FBE96_07230) ctsE 1414066..1415625 (-) 1560 WP_011812800.1 GspE/PulE family protein Machinery gene
  FBE96_RS07175 (FBE96_07235) ctsX 1415615..1416202 (-) 588 WP_002851370.1 membrane protein Machinery gene
  FBE96_RS07180 (FBE96_07240) ctsP 1416206..1416814 (-) 609 WP_002851464.1 ATP-binding protein Machinery gene
  FBE96_RS07185 (FBE96_07245) ctsD 1416807..1418219 (-) 1413 WP_002871859.1 pilus (MSHA type) biogenesis protein MshL Machinery gene
  FBE96_RS07190 (FBE96_07250) ctsR 1418197..1418508 (-) 312 WP_002855438.1 hypothetical protein Machinery gene

Sequence

Protein


Download         Length: 202 a.a.        Molecular weight: 23742.78 Da        Isoelectric Point: 9.9955

>NTDB_id=365685 FBE96_RS07180 WP_002851464.1 1416206..1416814(-) (ctsP) [Campylobacter sp. CFSAN093241]
MSKIIPFREEIFHQINQILESQKAFIFLWGKSGSGKSVLLQRLAKKYNVDFINENFKDQSFLKEKIEFLISQGQSLIILD
EVGMYDYAMLESIRIYSDSISFVLSSHKKLNILKKEHFKSRLSACFKLKNISLLELDDYIKLKFGMNFSNKCLKFLQKIS
QGNLRYIDKTLKSFYEINSFFDKNKSQEYILKLSALENGLLR

Nucleotide


Download         Length: 609 bp        

>NTDB_id=365685 FBE96_RS07180 WP_002851464.1 1416206..1416814(-) (ctsP) [Campylobacter sp. CFSAN093241]
ATGAGTAAAATTATTCCATTTAGAGAAGAAATTTTTCATCAAATCAATCAAATTTTAGAAAGCCAAAAAGCTTTTATTTT
TTTATGGGGAAAAAGTGGTAGTGGTAAAAGTGTATTGTTGCAAAGATTGGCAAAAAAATATAATGTTGATTTTATTAATG
AAAATTTTAAAGATCAGAGTTTCTTAAAAGAAAAAATTGAGTTTTTGATTTCACAAGGTCAGAGTTTAATCATTCTTGAT
GAAGTGGGAATGTATGATTATGCAATGCTAGAAAGCATCAGGATTTATAGTGATTCTATAAGTTTTGTTTTAAGTTCTCA
TAAAAAGTTAAATATACTTAAAAAAGAGCATTTTAAAAGTCGTTTAAGTGCTTGTTTTAAATTGAAAAATATTAGTCTTT
TAGAACTTGATGATTATATTAAATTGAAATTCGGAATGAATTTTTCAAATAAATGTCTTAAGTTTTTACAAAAAATTTCT
CAAGGAAATTTAAGATATATTGATAAAACTTTAAAAAGTTTTTATGAGATAAATAGTTTTTTTGATAAAAACAAAAGTCA
AGAGTATATTTTAAAGCTTAGTGCTTTAGAGAATGGCTTATTAAGGTAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ctsP Campylobacter jejuni subsp. jejuni 81-176

99.505

100

0.995

Multiple sequence alignment