Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprA   Type   Machinery gene
Locus tag   FBE96_RS03160 Genome accession   NZ_CP040612
Coordinates   607625..608398 (+) Length   257 a.a.
NCBI ID   WP_002868431.1    Uniprot ID   A0AAW5E9C5
Organism   Campylobacter sp. CFSAN093241     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 602625..613398
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FBE96_RS03145 (FBE96_03165) - 603474..605408 (-) 1935 WP_165433336.1 ribonuclease R family protein -
  FBE96_RS03150 (FBE96_03170) ilvC 605527..606549 (+) 1023 WP_002852218.1 ketol-acid reductoisomerase -
  FBE96_RS03155 (FBE96_03175) - 606553..607635 (+) 1083 WP_002864866.1 divergent polysaccharide deacetylase family protein -
  FBE96_RS03160 (FBE96_03180) dprA 607625..608398 (+) 774 WP_002868431.1 DNA-processing protein DprA Machinery gene
  FBE96_RS03165 (FBE96_03185) ruvX 608395..608778 (+) 384 WP_002852281.1 Holliday junction resolvase RuvX -
  FBE96_RS03170 (FBE96_03190) - 608807..609646 (+) 840 WP_002866496.1 RsmB/NOP family class I SAM-dependent RNA methyltransferase -
  FBE96_RS03175 (FBE96_03195) msrA 609822..610319 (-) 498 WP_002852283.1 peptide-methionine (S)-S-oxide reductase MsrA -
  FBE96_RS03180 (FBE96_03200) ppa 610361..610879 (-) 519 WP_002867724.1 inorganic diphosphatase -
  FBE96_RS03185 (FBE96_03205) - 610889..611467 (-) 579 WP_002859580.1 adenylate kinase -
  FBE96_RS03190 (FBE96_03210) aspS 611464..613215 (-) 1752 WP_002874290.1 aspartate--tRNA ligase -

Sequence

Protein


Download         Length: 257 a.a.        Molecular weight: 28848.66 Da        Isoelectric Point: 7.0853

>NTDB_id=365668 FBE96_RS03160 WP_002868431.1 607625..608398(+) (dprA) [Campylobacter sp. CFSAN093241]
MASEILPDEFLELFKDLKKPPKKLHYKGNLSLLKQDKIAIIGSRRMSVYTKNCVFSLASMLKNAHLCVVSGGALGVDITA
SMAAMPNTIGIFANGLDQIYPRTNEKIIKQIYENALALSEYEDDYLPKNYDFLLRNRLVIALSKAVVVAQADIKSGSMQS
AKLALELNKPLYVLPQRLEESTGTNFLLKENKAKLICDFKEFVSEFASIDINQDEFLEFCKKGVSVDEALKIYGQKVYEY
ELEGKISIEGLFIRVLA

Nucleotide


Download         Length: 774 bp        

>NTDB_id=365668 FBE96_RS03160 WP_002868431.1 607625..608398(+) (dprA) [Campylobacter sp. CFSAN093241]
ATGGCAAGTGAAATTTTGCCTGATGAATTTTTAGAACTTTTTAAAGATTTAAAAAAGCCTCCTAAAAAATTACACTATAA
AGGAAATTTATCTTTATTAAAACAAGATAAAATCGCTATTATAGGTTCAAGGCGTATGAGTGTTTATACGAAAAATTGTG
TTTTTTCCTTAGCGAGTATGCTTAAAAATGCTCATCTTTGCGTGGTAAGTGGCGGTGCTTTGGGTGTGGATATCACCGCA
AGTATGGCAGCTATGCCAAATACTATAGGTATTTTTGCCAATGGTTTAGATCAAATTTATCCAAGAACTAATGAAAAAAT
CATTAAACAAATTTATGAAAATGCTTTAGCTTTAAGTGAATACGAAGATGATTATTTGCCAAAAAATTATGATTTTTTAC
TAAGAAATCGTTTGGTTATTGCTTTAAGTAAGGCCGTTGTGGTTGCACAAGCAGATATAAAAAGTGGTTCTATGCAGAGT
GCAAAACTTGCTTTAGAACTCAATAAACCTTTATATGTTTTACCACAAAGACTAGAAGAAAGCACAGGAACTAATTTTCT
TTTAAAGGAAAATAAAGCAAAGTTAATTTGTGATTTTAAAGAATTTGTAAGTGAGTTTGCAAGTATAGATATAAATCAAG
ATGAGTTTTTAGAGTTTTGTAAAAAAGGTGTGAGTGTTGATGAGGCTTTAAAAATTTATGGACAAAAAGTTTATGAATAT
GAACTTGAGGGAAAAATTTCCATAGAAGGGCTTTTTATAAGGGTTTTAGCATGA

Domains

Predicted by InterproScan.

DNA recombination-mediator protein A (DNA_processg_A)

(9-197)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

98.444

100

0.984
  dprA Helicobacter pylori 26695

49.167

93.385

0.459

Multiple sequence alignment