Detailed information    

insolico Bioinformatically predicted

Overview

Name   CJE0566   Type   Regulator
Locus tag   FBE96_RS02965 Genome accession   NZ_CP040612
Coordinates   562863..563513 (-) Length   216 a.a.
NCBI ID   WP_145599577.1    Uniprot ID   -
Organism   Campylobacter sp. CFSAN093241     
Function   repress natural transformation (predicted from homology)   
Competence regulation

Genomic Context

Location: 557863..568513
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FBE96_RS02930 (FBE96_02955) - 558241..559245 (+) 1005 WP_002852264.1 membrane protein -
  FBE96_RS02935 (FBE96_02960) - 559242..560003 (+) 762 WP_002852328.1 TlyA family RNA methyltransferase -
  FBE96_RS02940 (FBE96_02965) - 559969..560823 (+) 855 WP_002872056.1 bifunctional riboflavin kinase/FAD synthetase -
  FBE96_RS02945 (FBE96_02970) cmoA 560810..561520 (+) 711 WP_079254426.1 carboxy-S-adenosyl-L-methionine synthase CmoA -
  FBE96_RS02950 (FBE96_02975) - 561510..561731 (-) 222 WP_002859102.1 EexN family lipoprotein -
  FBE96_RS02955 (FBE96_02980) - 561728..562162 (-) 435 WP_002868091.1 EexN family lipoprotein -
  FBE96_RS02960 (FBE96_02985) - 562220..562852 (-) 633 WP_002874216.1 trimeric intracellular cation channel family protein -
  FBE96_RS02965 (FBE96_02990) CJE0566 562863..563513 (-) 651 WP_145599577.1 DNA/RNA non-specific endonuclease Regulator
  FBE96_RS02970 (FBE96_02995) nth 563510..564136 (-) 627 WP_002852225.1 endonuclease III -
  FBE96_RS02975 (FBE96_03000) peb4 564217..565038 (+) 822 WP_002879177.1 peptidylprolyl isomerase PEB4 -
  FBE96_RS02980 (FBE96_03005) fbaA 565038..566102 (+) 1065 WP_002856965.1 class II fructose-bisphosphate aldolase -
  FBE96_RS02985 (FBE96_03010) - 566197..567639 (+) 1443 WP_002852205.1 MotA/TolQ/ExbB proton channel family protein -

Sequence

Protein


Download         Length: 216 a.a.        Molecular weight: 25539.28 Da        Isoelectric Point: 9.7361

>NTDB_id=365667 FBE96_RS02965 WP_145599577.1 562863..563513(-) (CJE0566) [Campylobacter sp. CFSAN093241]
MKIFIFLLTISLNIFALEPYKPSADFSSYFNNINCSQILDKFFYLNCYDYKFKGTKAVAYKVEASNLKDKQIKKRPRFED
DTNIPKKYRTTWSDYKNSGYTRGHTAPNASFSFSKAAQNSVFLMSNITPQIAQINNKIWNEIEQRERNLAFKFQSIEVLN
LVLYDKEPQYIKNRIAIPSFYVKIIKTPKFKECYQVPNHEVNDENIKQYQINCDKF

Nucleotide


Download         Length: 651 bp        

>NTDB_id=365667 FBE96_RS02965 WP_145599577.1 562863..563513(-) (CJE0566) [Campylobacter sp. CFSAN093241]
ATGAAAATTTTCATCTTTTTACTCACTATATCTCTTAATATTTTTGCCTTAGAACCTTACAAGCCTAGTGCTGATTTTTC
TTCTTATTTTAACAATATAAATTGCTCGCAAATCTTAGATAAGTTTTTTTATCTAAATTGCTATGATTATAAATTCAAAG
GCACAAAAGCCGTTGCTTATAAAGTAGAGGCTTCAAATTTGAAAGATAAACAAATCAAAAAACGCCCTCGCTTTGAAGAT
GATACAAATATACCTAAAAAATACCGCACTACTTGGAGTGATTATAAAAACAGTGGTTACACACGAGGACACACTGCGCC
TAATGCTTCTTTTAGCTTTAGTAAAGCTGCTCAAAATTCAGTATTTTTAATGAGCAATATTACCCCACAAATTGCACAAA
TAAATAATAAAATTTGGAATGAAATCGAGCAAAGAGAAAGAAATTTGGCTTTCAAATTTCAAAGTATCGAAGTTTTAAAT
TTAGTACTTTACGATAAAGAACCACAATACATTAAAAACCGTATTGCTATACCAAGTTTTTATGTAAAAATTATTAAAAC
TCCGAAATTTAAAGAATGCTATCAAGTACCAAACCATGAAGTAAATGATGAAAATATTAAACAGTATCAAATAAATTGTG
ATAAATTTTAA

Domains

Predicted by InterproScan.

DNA/RNA non-specific endonuclease (Endonuclease_NS)

(34-215)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  CJE0566 Campylobacter jejuni RM1221

70.051

91.204

0.639
  CJE1441 Campylobacter jejuni RM1221

69.036

91.204

0.63

Multiple sequence alignment