Detailed information    

insolico Bioinformatically predicted

Overview

Name   ctsR   Type   Machinery gene
Locus tag   FBF06_RS08225 Genome accession   NZ_CP040610
Coordinates   1588611..1588922 (-) Length   103 a.a.
NCBI ID   WP_002855438.1    Uniprot ID   A0AA44HLF8
Organism   Campylobacter sp. CFSAN093227     
Function   type II secretion system/type IV pilin; DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1583611..1593922
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FBF06_RS08205 (FBF06_08225) ctsE 1584480..1586039 (-) 1560 WP_032601517.1 GspE/PulE family protein Machinery gene
  FBF06_RS08210 (FBF06_08230) ctsX 1586029..1586616 (-) 588 WP_002851370.1 membrane protein Machinery gene
  FBF06_RS08215 (FBF06_08235) ctsP 1586620..1587228 (-) 609 WP_002851464.1 ATP-binding protein Machinery gene
  FBF06_RS08220 (FBF06_08240) ctsD 1587221..1588633 (-) 1413 WP_002856543.1 pilus (MSHA type) biogenesis protein MshL Machinery gene
  FBF06_RS08225 (FBF06_08245) ctsR 1588611..1588922 (-) 312 WP_002855438.1 hypothetical protein Machinery gene
  FBF06_RS08230 (FBF06_08250) nifJ 1588946..1592506 (-) 3561 WP_002851382.1 pyruvate:ferredoxin (flavodoxin) oxidoreductase -
  FBF06_RS08235 (FBF06_08255) - 1592600..1593241 (-) 642 WP_002855494.1 HAD family hydrolase -

Sequence

Protein


Download         Length: 103 a.a.        Molecular weight: 12475.38 Da        Isoelectric Point: 5.8722

>NTDB_id=365632 FBF06_RS08225 WP_002855438.1 1588611..1588922(-) (ctsR) [Campylobacter sp. CFSAN093227]
MCFSTLFAQDNFEEYFKLIDKENRINFNTLQNPFVNPTFEKLRHIKITAIMLDKVKIYDRWYKKGDMIDDAIIYEINTKE
IKFQYDNLEIAIQINKNDKININ

Nucleotide


Download         Length: 312 bp        

>NTDB_id=365632 FBF06_RS08225 WP_002855438.1 1588611..1588922(-) (ctsR) [Campylobacter sp. CFSAN093227]
TTGTGTTTTAGCACTTTGTTTGCACAAGATAATTTTGAAGAGTATTTTAAACTTATAGATAAAGAAAATCGTATAAATTT
TAATACTCTTCAAAACCCATTTGTGAATCCTACTTTTGAAAAATTAAGACATATTAAAATTACTGCAATTATGCTTGATA
AAGTAAAAATTTATGATCGATGGTATAAAAAAGGTGATATGATTGATGATGCTATAATATATGAAATAAATACTAAAGAG
ATTAAATTCCAATATGATAATTTAGAAATTGCAATCCAAATAAATAAAAATGATAAGATTAATATTAATTAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ctsR Campylobacter jejuni subsp. jejuni 81-176

100

100

1

Multiple sequence alignment