Detailed information    

insolico Bioinformatically predicted

Overview

Name   ctsX   Type   Machinery gene
Locus tag   FBF06_RS08210 Genome accession   NZ_CP040610
Coordinates   1586029..1586616 (-) Length   195 a.a.
NCBI ID   WP_002851370.1    Uniprot ID   A0AB36G4D4
Organism   Campylobacter sp. CFSAN093227     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1581029..1591616
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FBF06_RS08190 (FBF06_08210) - 1581777..1582541 (+) 765 WP_002918633.1 TIGR02757 family protein -
  FBF06_RS08195 (FBF06_08215) - 1582545..1583315 (+) 771 WP_004314270.1 TSUP family transporter -
  FBF06_RS08200 (FBF06_08220) ctsF 1583302..1584483 (-) 1182 WP_057041182.1 type II secretion system F family protein Machinery gene
  FBF06_RS08205 (FBF06_08225) ctsE 1584480..1586039 (-) 1560 WP_032601517.1 GspE/PulE family protein Machinery gene
  FBF06_RS08210 (FBF06_08230) ctsX 1586029..1586616 (-) 588 WP_002851370.1 membrane protein Machinery gene
  FBF06_RS08215 (FBF06_08235) ctsP 1586620..1587228 (-) 609 WP_002851464.1 ATP-binding protein Machinery gene
  FBF06_RS08220 (FBF06_08240) ctsD 1587221..1588633 (-) 1413 WP_002856543.1 pilus (MSHA type) biogenesis protein MshL Machinery gene
  FBF06_RS08225 (FBF06_08245) ctsR 1588611..1588922 (-) 312 WP_002855438.1 hypothetical protein Machinery gene

Sequence

Protein


Download         Length: 195 a.a.        Molecular weight: 23359.43 Da        Isoelectric Point: 9.8409

>NTDB_id=365629 FBF06_RS08210 WP_002851370.1 1586029..1586616(-) (ctsX) [Campylobacter sp. CFSAN093227]
MQERIKELELRYKYFLLKKYLKYLLLIILISVIAFCFFVLMQKYNKQKNIYLQAIEHKKHLEQKILQAQILQEKNKISRE
KLYKELEEVKAVQENTHISKIEIDSKILNISDLKKSFYQNPSYEKALNLAKKYFDIKAYQKTIFWALKANELDKQKQDSW
LIFAQAKRALGEEKEAQSALDAYINYYGLMELDGK

Nucleotide


Download         Length: 588 bp        

>NTDB_id=365629 FBF06_RS08210 WP_002851370.1 1586029..1586616(-) (ctsX) [Campylobacter sp. CFSAN093227]
ATGCAAGAAAGAATTAAAGAGCTTGAGCTTAGGTATAAATACTTTTTACTTAAAAAATATTTAAAATATTTATTATTAAT
TATTCTAATATCAGTAATAGCATTTTGTTTTTTTGTGCTAATGCAAAAATATAATAAGCAAAAAAATATTTATTTGCAAG
CTATTGAACATAAAAAGCATTTGGAGCAAAAGATTCTTCAAGCGCAAATTTTACAAGAAAAAAATAAGATTTCTAGGGAA
AAGTTATATAAAGAACTAGAAGAAGTTAAAGCGGTGCAGGAAAATACACATATTAGCAAGATAGAAATTGATTCTAAAAT
TTTAAATATTTCTGATTTAAAAAAATCTTTTTATCAAAATCCAAGCTATGAAAAGGCTTTAAATTTAGCTAAGAAGTATT
TTGATATTAAAGCTTATCAAAAGACAATATTTTGGGCTTTAAAAGCCAATGAACTTGACAAGCAAAAACAAGATTCTTGG
CTGATTTTTGCTCAGGCTAAAAGAGCTTTAGGTGAAGAAAAAGAAGCTCAAAGTGCTTTAGATGCTTATATAAATTATTA
TGGTTTAATGGAATTAGATGGAAAGTAG

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ctsX Campylobacter jejuni subsp. jejuni 81-176

100

100

1

Multiple sequence alignment