Detailed information    

insolico Bioinformatically predicted

Overview

Name   ceuB   Type   Machinery gene
Locus tag   FBF06_RS07605 Genome accession   NZ_CP040610
Coordinates   1457578..1458546 (+) Length   322 a.a.
NCBI ID   WP_063668012.1    Uniprot ID   -
Organism   Campylobacter sp. CFSAN093227     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1452578..1463546
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FBF06_RS07580 (FBF06_07605) - 1453488..1454213 (-) 726 WP_002834214.1 phosphatidate cytidylyltransferase -
  FBF06_RS07585 (FBF06_07610) - 1454222..1454560 (-) 339 WP_002852397.1 hypothetical protein -
  FBF06_RS07590 (FBF06_07615) - 1454562..1455869 (-) 1308 WP_002864240.1 NFACT family protein -
  FBF06_RS07595 (FBF06_07620) - 1455931..1456506 (+) 576 WP_002867312.1 molybdenum cofactor guanylyltransferase -
  FBF06_RS07600 (FBF06_07625) - 1456503..1457492 (+) 990 WP_002867311.1 phospholipase A -
  FBF06_RS07605 (FBF06_07630) ceuB 1457578..1458546 (+) 969 WP_063668012.1 ABC transporter permease Machinery gene
  FBF06_RS07610 (FBF06_07635) - 1458539..1459477 (+) 939 WP_002867309.1 iron chelate uptake ABC transporter family permease subunit -
  FBF06_RS07615 (FBF06_07640) - 1459474..1460229 (+) 756 WP_002896069.1 ABC transporter ATP-binding protein -
  FBF06_RS07620 (FBF06_07645) ceuB 1460242..1461234 (+) 993 WP_002867307.1 enterochelin ABC transporter substrate-binding protein CeuB -
  FBF06_RS07630 (FBF06_07655) - 1461460..1462014 (-) 555 WP_043012925.1 membrane protein -

Sequence

Protein


Download         Length: 322 a.a.        Molecular weight: 35481.45 Da        Isoelectric Point: 9.6678

>NTDB_id=365624 FBF06_RS07605 WP_063668012.1 1457578..1458546(+) (ceuB) [Campylobacter sp. CFSAN093227]
MFFKHILSLKVLIALLLFFGMISLFIGVISINVKDILNLNSTQLEIITLTRIPRLIAILLTGMSLSICGLIMQQLTQNKF
VSPTTAGTMDCAKFGILISLIFFTGASFFIQAIIASIFALLGSFIFIQILRKIKLKDVIFVPLIGLMFGGIISAITTFFA
YALNYIQNIQGWLQGSMANVMQGNYELLYISLPLFILAYFLAHKITIVGMGEDIALNLGISYNGILFLGLMIVSIITSLV
IVSVGIIPFLGLIIPNLVALYLGDNLRKNLIYIALCGALFLLVCDIISRLVIFPFEMPLSITTGVLGSLIFIFLLLKRKV
YA

Nucleotide


Download         Length: 969 bp        

>NTDB_id=365624 FBF06_RS07605 WP_063668012.1 1457578..1458546(+) (ceuB) [Campylobacter sp. CFSAN093227]
TTGTTTTTTAAGCATATATTGAGTTTAAAAGTGCTTATAGCTTTACTTTTATTCTTTGGAATGATAAGTTTATTTATAGG
AGTTATCAGTATCAATGTAAAAGATATCCTTAATCTTAACTCCACTCAACTAGAAATCATAACCCTTACAAGAATTCCTA
GACTTATAGCGATTTTACTCACAGGAATGAGTCTTAGTATATGCGGGCTTATCATGCAACAACTCACGCAAAATAAATTC
GTTTCTCCAACTACGGCAGGAACTATGGATTGTGCTAAATTTGGCATACTTATTTCTTTAATATTTTTTACTGGAGCATC
TTTTTTCATTCAAGCTATCATTGCTTCTATATTTGCACTTTTGGGTTCTTTTATATTTATCCAAATTTTAAGAAAAATCA
AACTCAAAGATGTGATTTTTGTACCTTTGATAGGCTTGATGTTTGGAGGCATTATTAGTGCTATAACCACTTTTTTTGCC
TATGCTTTAAATTATATACAAAATATCCAAGGCTGGCTACAAGGCAGTATGGCAAATGTTATGCAGGGAAATTATGAATT
ACTTTACATTTCTTTGCCACTTTTTATACTTGCTTATTTTTTAGCTCACAAAATCACCATAGTTGGCATGGGTGAAGATA
TAGCTTTAAATCTTGGAATTTCTTATAATGGGATATTATTTTTAGGCTTGATGATTGTAAGCATTATCACTAGTTTAGTG
ATTGTAAGCGTTGGGATTATCCCTTTTTTAGGGCTAATTATCCCAAATTTAGTAGCTCTTTATCTAGGTGATAATCTTAG
AAAAAATCTTATCTATATAGCACTTTGTGGAGCTTTGTTTTTACTTGTTTGCGATATCATTTCAAGACTTGTCATCTTTC
CTTTTGAAATGCCTTTAAGCATCACTACAGGTGTTTTAGGATCTTTAATCTTTATCTTTCTTTTGCTAAAAAGGAAAGTT
TATGCGTAA

Domains

Predicted by InterproScan.

FecCD transport family (FecCD)

(15-317)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ceuB Campylobacter jejuni subsp. jejuni 81-176

98.758

100

0.988

Multiple sequence alignment