Detailed information    

insolico Bioinformatically predicted

Overview

Name   comYE   Type   Machinery gene
Locus tag   SMUNN2025_RS00980 Genome accession   NC_013928
Coordinates   206307..206600 (+) Length   97 a.a.
NCBI ID   WP_002263439.1    Uniprot ID   -
Organism   Streptococcus mutans NN2025     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 201307..211600
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SMUNN2025_RS00955 (SmuNN2025_0170) - 203207..203590 (+) 384 WP_002263434.1 DUF1033 family protein -
  SMUNN2025_RS00960 (SmuNN2025_0171) comYA 203722..204663 (+) 942 WP_002263435.1 competence type IV pilus ATPase ComGA Machinery gene
  SMUNN2025_RS00965 (SmuNN2025_0172) comYB 204599..205630 (+) 1032 WP_255262945.1 competence type IV pilus assembly protein ComGB Machinery gene
  SMUNN2025_RS00970 (SmuNN2025_0173) comYC 205630..205944 (+) 315 WP_002263437.1 competence type IV pilus major pilin ComGC Machinery gene
  SMUNN2025_RS00975 (SmuNN2025_0174) comYD 205931..206335 (+) 405 WP_002273742.1 competence type IV pilus minor pilin ComGD Machinery gene
  SMUNN2025_RS00980 (SmuNN2025_0175) comYE 206307..206600 (+) 294 WP_002263439.1 competence type IV pilus minor pilin ComGE Machinery gene
  SMUNN2025_RS00985 (SmuNN2025_0176) comYF 206587..207021 (+) 435 WP_002264245.1 competence type IV pilus minor pilin ComGF Machinery gene
  SMUNN2025_RS00990 (SmuNN2025_0177) comYG 206999..207388 (+) 390 WP_002278009.1 competence type IV pilus minor pilin ComGG Machinery gene
  SMUNN2025_RS00995 (SmuNN2025_0178) comYH 207443..208396 (+) 954 WP_002278010.1 class I SAM-dependent methyltransferase Machinery gene
  SMUNN2025_RS01000 (SmuNN2025_0179) - 208455..209654 (+) 1200 WP_002265895.1 acetate kinase -
  SMUNN2025_RS01005 (SmuNN2025_0180) - 210215..210460 (+) 246 WP_002278011.1 helix-turn-helix transcriptional regulator -
  SMUNN2025_RS01010 (SmuNN2025_0181) - 210429..210869 (+) 441 WP_002263445.1 hypothetical protein -
  SMUNN2025_RS01015 (SmuNN2025_0182) - 210922..211584 (+) 663 WP_002263446.1 type II CAAX endopeptidase family protein -

Sequence

Protein


Download         Length: 97 a.a.        Molecular weight: 11001.91 Da        Isoelectric Point: 9.4908

>NTDB_id=36562 SMUNN2025_RS00980 WP_002263439.1 206307..206600(+) (comYE) [Streptococcus mutans NN2025]
MVSIKKQKVKAYILLESLVALGLFVTITTLILTQLSHYQERTAKNLQKQEILNLAIMALQTQQDHLSFNGVSVTVVKNQG
ETIVYHDHEEVINLVKK

Nucleotide


Download         Length: 294 bp        

>NTDB_id=36562 SMUNN2025_RS00980 WP_002263439.1 206307..206600(+) (comYE) [Streptococcus mutans NN2025]
GTGGTCAGTATAAAAAAACAGAAAGTTAAAGCTTATATTCTTCTAGAAAGTTTAGTTGCTTTGGGACTTTTCGTAACCAT
CACAACTTTAATTCTTACTCAGTTGAGTCATTATCAGGAAAGAACAGCTAAAAATTTACAAAAACAAGAAATATTGAATT
TAGCAATAATGGCTCTTCAAACTCAGCAAGATCATTTAAGCTTCAACGGCGTCAGTGTTACGGTTGTTAAAAATCAAGGG
GAAACTATAGTTTATCATGATCATGAGGAGGTTATCAATCTTGTTAAAAAGTAA

Domains

Predicted by InterproScan.

Type II secretory pathway pseudopilin (ComGE)

(13-94)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comYE Streptococcus mutans UA140

100

100

1
  comYE Streptococcus mutans UA159

100

100

1
  comGE/cglE Streptococcus pneumoniae Rx1

44.444

92.784

0.412
  comGE/cglE Streptococcus pneumoniae D39

44.444

92.784

0.412
  comGE/cglE Streptococcus pneumoniae R6

44.444

92.784

0.412
  comGE/cglE Streptococcus pneumoniae TIGR4

44.444

92.784

0.412
  comGE/cglE Streptococcus mitis NCTC 12261

44.444

92.784

0.412
  comGE/cglE Streptococcus mitis SK321

44.444

92.784

0.412

Multiple sequence alignment