Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprA   Type   Machinery gene
Locus tag   FBF06_RS03470 Genome accession   NZ_CP040610
Coordinates   642209..642982 (+) Length   257 a.a.
NCBI ID   WP_002859984.1    Uniprot ID   -
Organism   Campylobacter sp. CFSAN093227     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 637209..647982
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FBF06_RS03455 (FBF06_03435) - 638058..639992 (-) 1935 WP_100620187.1 ribonuclease R family protein -
  FBF06_RS03460 (FBF06_03440) ilvC 640111..641133 (+) 1023 WP_002858483.1 ketol-acid reductoisomerase -
  FBF06_RS03465 (FBF06_03445) - 641137..642219 (+) 1083 WP_002859983.1 divergent polysaccharide deacetylase family protein -
  FBF06_RS03470 (FBF06_03450) dprA 642209..642982 (+) 774 WP_002859984.1 DNA-processing protein DprA Machinery gene
  FBF06_RS03475 (FBF06_03455) ruvX 642979..643362 (+) 384 WP_002852281.1 Holliday junction resolvase RuvX -
  FBF06_RS03480 (FBF06_03460) - 643391..644230 (+) 840 WP_002866496.1 RsmB/NOP family class I SAM-dependent RNA methyltransferase -
  FBF06_RS03485 (FBF06_03465) msrA 644405..644902 (-) 498 WP_002852283.1 peptide-methionine (S)-S-oxide reductase MsrA -
  FBF06_RS03490 (FBF06_03470) ppa 644944..645462 (-) 519 WP_002867724.1 inorganic diphosphatase -
  FBF06_RS03495 (FBF06_03475) - 645472..646050 (-) 579 WP_168977540.1 adenylate kinase -
  FBF06_RS03500 (FBF06_03480) aspS 646047..647798 (-) 1752 WP_100620190.1 aspartate--tRNA ligase -

Sequence

Protein


Download         Length: 257 a.a.        Molecular weight: 28848.61 Da        Isoelectric Point: 6.4874

>NTDB_id=365612 FBF06_RS03470 WP_002859984.1 642209..642982(+) (dprA) [Campylobacter sp. CFSAN093227]
MASEILPDEFLELFQDLKKPPKKLHYKGNLSLLKQDKIAIIGSRRMSVYTKNCVFSLASMLKNAHLCVVSGGALGVDITA
SMAAMPNTIGIFANGLDQIYPRTNEKIIKQIYENALALSEYEDDYLPKNYDFLLRNRLVIALSKAVVVAQADIKSGSMQS
AKLALELNKPLYVLPQRLEESTGTNFLLKENKAKLICDFKEFVSEFASIDINQDEFLEFCKKGVSVDEALKIYGQKVYEY
ELEGKISIEGLFIRVLA

Nucleotide


Download         Length: 774 bp        

>NTDB_id=365612 FBF06_RS03470 WP_002859984.1 642209..642982(+) (dprA) [Campylobacter sp. CFSAN093227]
ATGGCAAGTGAAATTTTGCCTGATGAATTTTTAGAGCTTTTTCAAGATTTAAAAAAGCCTCCTAAAAAATTACACTATAA
AGGAAATTTATCTTTATTAAAACAAGATAAAATCGCTATTATAGGTTCAAGGCGTATGAGTGTTTATACGAAAAATTGTG
TTTTTTCCTTAGCGAGTATGCTTAAAAATGCTCATCTTTGCGTGGTAAGTGGCGGTGCTTTGGGTGTGGATATCACCGCA
AGTATGGCAGCTATGCCAAATACTATAGGTATTTTTGCCAATGGTTTAGATCAAATTTATCCAAGAACTAATGAAAAAAT
CATTAAACAAATTTATGAAAATGCTTTAGCTTTAAGTGAATACGAAGATGATTATTTGCCAAAAAATTATGATTTTTTAC
TAAGAAATCGTTTGGTTATTGCTTTAAGTAAGGCCGTTGTGGTTGCACAAGCAGATATAAAAAGTGGTTCTATGCAGAGT
GCAAAACTTGCTTTAGAACTCAATAAACCTTTATATGTTTTACCACAAAGACTAGAAGAAAGCACAGGAACTAATTTTCT
TTTAAAGGAAAATAAAGCAAAGTTAATTTGTGATTTTAAAGAATTTGTAAGTGAGTTTGCAAGTATAGATATAAATCAAG
ATGAGTTTTTAGAGTTTTGTAAAAAAGGTGTGAGTGTTGATGAGGCTTTAAAAATTTATGGACAAAAAGTTTATGAATAT
GAACTTGAGGGAAAAATTTCCATAGAAGGGCTTTTTATAAGGGTTTTAGCATGA

Domains

Predicted by InterproScan.

DNA recombination-mediator protein A (DNA_processg_A)

(9-197)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

98.054

100

0.981
  dprA Helicobacter pylori 26695

49.167

93.385

0.459

Multiple sequence alignment