Detailed information    

insolico Bioinformatically predicted

Overview

Name   CJE0566   Type   Regulator
Locus tag   FBF06_RS03270 Genome accession   NZ_CP040610
Coordinates   596776..597426 (-) Length   216 a.a.
NCBI ID   WP_002923759.1    Uniprot ID   A0A5T0IQG5
Organism   Campylobacter sp. CFSAN093227     
Function   repress natural transformation (predicted from homology)   
Competence regulation

Genomic Context

Location: 591776..602426
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FBF06_RS03235 (FBF06_03220) - 592154..593158 (+) 1005 WP_079264874.1 hypothetical protein -
  FBF06_RS03240 (FBF06_03225) - 593155..593916 (+) 762 WP_002902002.1 TlyA family RNA methyltransferase -
  FBF06_RS03245 (FBF06_03230) - 593882..594736 (+) 855 WP_002884103.1 bifunctional riboflavin kinase/FAD synthetase -
  FBF06_RS03250 (FBF06_03235) cmoA 594723..595433 (+) 711 WP_002859101.1 carboxy-S-adenosyl-L-methionine synthase CmoA -
  FBF06_RS03255 (FBF06_03240) - 595423..595644 (-) 222 WP_002859102.1 EexN family lipoprotein -
  FBF06_RS03260 (FBF06_03245) - 595641..596075 (-) 435 WP_002855128.1 EexN family lipoprotein -
  FBF06_RS03265 (FBF06_03250) - 596133..596765 (-) 633 WP_002870070.1 trimeric intracellular cation channel family protein -
  FBF06_RS03270 (FBF06_03255) CJE0566 596776..597426 (-) 651 WP_002923759.1 DNA/RNA non-specific endonuclease Regulator
  FBF06_RS03275 (FBF06_03260) nth 597423..598049 (-) 627 WP_002852225.1 endonuclease III -
  FBF06_RS03280 (FBF06_03265) peb4 598130..598951 (+) 822 WP_002852119.1 peptidylprolyl isomerase PEB4 -
  FBF06_RS03285 (FBF06_03270) fbaA 598951..600015 (+) 1065 WP_002923762.1 class II fructose-bisphosphate aldolase -
  FBF06_RS03290 (FBF06_03275) - 600110..601552 (+) 1443 WP_002875368.1 MotA/TolQ/ExbB proton channel family protein -

Sequence

Protein


Download         Length: 216 a.a.        Molecular weight: 25532.25 Da        Isoelectric Point: 9.9028

>NTDB_id=365611 FBF06_RS03270 WP_002923759.1 596776..597426(-) (CJE0566) [Campylobacter sp. CFSAN093227]
MKIFIFLLTISLNIFALEPYKPSADFSSYFNNINCSQILDKFFYLNCYDYKLKGTKAVAYKVEASNLKDRQIKKRPRFED
DTNIPKKYRTTWSNYKNSGYTRGHTAPNASFSFSKAAQNSVFLMSNITPQNAQINNKIWNEIEQRERNLAFKFQSIEVLN
LVLYNKEPQYIKNRIAIPSFYVKIIKTPKFKECYQVPNHEVNDENIKQYQINCDKF

Nucleotide


Download         Length: 651 bp        

>NTDB_id=365611 FBF06_RS03270 WP_002923759.1 596776..597426(-) (CJE0566) [Campylobacter sp. CFSAN093227]
ATGAAAATTTTCATCTTTTTACTCACTATATCTCTTAATATTTTTGCCTTAGAACCTTACAAGCCTAGTGCTGATTTTTC
TTCTTATTTTAACAATATAAATTGCTCGCAAATCTTAGATAAGTTTTTTTATCTAAATTGCTATGATTATAAACTCAAAG
GCACAAAAGCTGTTGCTTATAAGGTAGAAGCTTCAAATTTGAAAGATAGACAAATCAAAAAACGCCCTCGCTTTGAAGAT
GATACAAATATTCCTAAAAAATACCGCACTACTTGGAGTAATTATAAAAACAGTGGTTACACACGAGGACACACTGCACC
CAATGCTTCTTTTAGCTTTAGTAAAGCTGCTCAAAATTCAGTATTTTTAATGAGTAATATTACCCCACAAAATGCACAAA
TAAATAATAAAATTTGGAATGAAATCGAGCAAAGAGAAAGAAATTTGGCTTTCAAATTCCAAAGTATCGAAGTTTTAAAT
TTAGTACTTTACAATAAAGAACCACAATACATTAAAAACCGTATTGCTATACCAAGTTTTTATGTAAAAATTATTAAAAC
TCCGAAATTTAAAGAATGCTATCAAGTACCAAACCATGAAGTAAATGATGAAAATATTAAACAGTATCAAATAAATTGTG
ATAAATTTTAA

Domains

Predicted by InterproScan.

DNA/RNA non-specific endonuclease (Endonuclease_NS)

(34-215)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A5T0IQG5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  CJE0566 Campylobacter jejuni RM1221

70.051

91.204

0.639
  CJE1441 Campylobacter jejuni RM1221

69.036

91.204

0.63

Multiple sequence alignment