Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprA   Type   Machinery gene
Locus tag   FBF11_RS03125 Genome accession   NZ_CP040607
Coordinates   596035..596808 (+) Length   257 a.a.
NCBI ID   WP_002868431.1    Uniprot ID   A0AAW5E9C5
Organism   Campylobacter sp. CFSAN093224     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 591035..601808
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FBF11_RS03110 (FBF11_03115) - 591884..593818 (-) 1935 WP_057097069.1 ribonuclease R family protein -
  FBF11_RS03115 (FBF11_03120) ilvC 593937..594959 (+) 1023 WP_057097071.1 ketol-acid reductoisomerase -
  FBF11_RS03120 (FBF11_03125) - 594963..596045 (+) 1083 WP_002859983.1 divergent polysaccharide deacetylase family protein -
  FBF11_RS03125 (FBF11_03130) dprA 596035..596808 (+) 774 WP_002868431.1 DNA-processing protein DprA Machinery gene
  FBF11_RS03130 (FBF11_03135) ruvX 596805..597188 (+) 384 WP_002852281.1 Holliday junction resolvase RuvX -
  FBF11_RS03135 (FBF11_03140) - 597217..598056 (+) 840 WP_079744478.1 RsmB/NOP family class I SAM-dependent RNA methyltransferase -
  FBF11_RS03140 (FBF11_03145) msrA 598232..598729 (-) 498 WP_002874288.1 peptide-methionine (S)-S-oxide reductase MsrA -
  FBF11_RS03145 (FBF11_03150) ppa 598770..599288 (-) 519 WP_002852138.1 inorganic diphosphatase -
  FBF11_RS03150 (FBF11_03155) - 599298..599876 (-) 579 WP_002868428.1 adenylate kinase -
  FBF11_RS03155 (FBF11_03160) aspS 599873..601624 (-) 1752 WP_057097074.1 aspartate--tRNA ligase -

Sequence

Protein


Download         Length: 257 a.a.        Molecular weight: 28848.66 Da        Isoelectric Point: 7.0853

>NTDB_id=365557 FBF11_RS03125 WP_002868431.1 596035..596808(+) (dprA) [Campylobacter sp. CFSAN093224]
MASEILPDEFLELFKDLKKPPKKLHYKGNLSLLKQDKIAIIGSRRMSVYTKNCVFSLASMLKNAHLCVVSGGALGVDITA
SMAAMPNTIGIFANGLDQIYPRTNEKIIKQIYENALALSEYEDDYLPKNYDFLLRNRLVIALSKAVVVAQADIKSGSMQS
AKLALELNKPLYVLPQRLEESTGTNFLLKENKAKLICDFKEFVSEFASIDINQDEFLEFCKKGVSVDEALKIYGQKVYEY
ELEGKISIEGLFIRVLA

Nucleotide


Download         Length: 774 bp        

>NTDB_id=365557 FBF11_RS03125 WP_002868431.1 596035..596808(+) (dprA) [Campylobacter sp. CFSAN093224]
ATGGCAAGTGAAATTTTGCCTGATGAATTTTTAGAACTTTTTAAAGATTTAAAAAAGCCTCCTAAAAAATTACACTATAA
AGGAAATTTATCTTTATTAAAACAAGATAAAATCGCTATTATAGGTTCAAGGCGTATGAGTGTTTATACGAAAAATTGTG
TTTTTTCCTTAGCGAGTATGCTTAAAAATGCTCATCTTTGCGTGGTAAGTGGCGGTGCTTTGGGTGTGGATATCACCGCA
AGTATGGCAGCTATGCCAAATACTATAGGTATTTTTGCTAATGGTTTAGATCAAATTTATCCAAGAACTAATGAAAAAAT
CATTAAACAAATTTATGAAAATGCTTTAGCTTTAAGTGAATACGAAGATGATTATTTGCCAAAAAATTATGACTTTTTAC
TAAGAAATCGTTTGGTTATTGCTTTAAGTAAGGCCGTTGTGGTTGCACAAGCAGATATAAAAAGTGGTTCTATGCAGAGT
GCAAAACTTGCTTTAGAACTCAATAAACCTTTATATGTTTTACCACAAAGACTAGAAGAAAGCACAGGAACTAATTTTCT
TTTAAAGGAAAATAAAGCAAAGTTAATTTGTGATTTTAAAGAATTTGTAAGTGAGTTTGCAAGTATAGATATAAATCAAG
ATGAATTTTTAGAGTTTTGTAAAAAAGGTGTGAGTGTTGATGAGGCTTTAAAAATTTATGGACAAAAAGTTTATGAATAT
GAACTTGAGGGAAAAATTTCCATAGAAGGGCTTTTTATAAGGGTTTTAGCATGA

Domains

Predicted by InterproScan.

DNA recombination-mediator protein A (DNA_processg_A)

(9-197)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

98.444

100

0.984
  dprA Helicobacter pylori 26695

49.167

93.385

0.459

Multiple sequence alignment