Detailed information NTG0365499

Bioinformatically predicted

Overview

• Name: pilA
• Type: Machinery gene
• Locus tag: FE785_RS09890
• Genome accession: NZ_CP040602
• Coordinates: 2173701..2174945 (+)
• Length: 414 a.a.
• NCBI ID: WP_138565591.1
• Uniprot ID: -
• Organism: Thiomicrorhabdus sediminis strain G1
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 2168701..2179945

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
FE785_RS09875 (FE785_09875)	-	2169128..2170753 (+)	1626	WP_138565588.1	sensor domain-containing diguanylate cyclase	-
FE785_RS09880 (FE785_09880)	-	2170778..2172097 (-)	1320	WP_138565589.1	M16 family metallopeptidase	-
FE785_RS09885 (FE785_09885)	-	2172097..2173470 (-)	1374	WP_138565590.1	M16 family metallopeptidase	-
FE785_RS09890 (FE785_09890)	pilA	2173701..2174945 (+)	1245	WP_138565591.1	signal recognition particle-docking protein FtsY	Machinery gene
FE785_RS09895 (FE785_09895)	-	2174986..2175780 (+)	795	WP_138565592.1	DUF2914 domain-containing protein	-
FE785_RS09900 (FE785_09900)	-	2175777..2176364 (+)	588	WP_138565593.1	transglycosylase SLT domain-containing protein	-
FE785_RS09905 (FE785_09905)	fabB	2176471..2177691 (-)	1221	WP_138565594.1	beta-ketoacyl-ACP synthase I	-
FE785_RS09910 (FE785_09910)	fabA	2177693..2178208 (-)	516	WP_138565595.1	3-hydroxyacyl-[acyl-carrier-protein] dehydratase FabA	-
FE785_RS09920 (FE785_09920)	-	2178464..2179231 (-)	768	WP_138565596.1	type III pantothenate kinase	-

Sequence

Protein

• Length: 414 a.a.
• Molecular weight: 44996.42 Da
• Isoelectric Point: 4.3668

>NTDB_id=365499 FE785_RS09890 WP_138565591.1 2173701..2174945(+) (pilA) [Thiomicrorhabdus sediminis strain G1]
MFSFFSRKKQQENQDTTTEENLTSEESEKSSTVDSQDTTEQTTANSEAEDNQLQALKSSEAKTDQPPIEPAVAEESSQDN
SEKSETEVTVATEPQESPAAEKKAGFFTRLKQGLSKTRQNFTDSLANLVLGRKEIDDDLLDDLEMILLTADVGVEATDRI
IQNLTDQVSRKELKDPQALMDSLKQQLESIIEPMSVALDVDAHLAKKPGPFVILMVGINGVGKTTTIGKLAKKFQLEGKS
VMLAAGDTFRAAAVEQLQTWGERNQVPVIAQKTGADSAAVIFDAIQSAKAKGIDVLIADTAGRLHTQSNLMEELKKVKRV
MSKVDETAPHEVMLVIDAGTGQNALNQAKQFGEAVDISGITLTKLDGTAKGGIVYALAEQQQIPIRYIGVGESIDDLREF
DAKSFTQALFSQSE

Nucleotide

• Length: 1245 bp

>NTDB_id=365499 FE785_RS09890 WP_138565591.1 2173701..2174945(+) (pilA) [Thiomicrorhabdus sediminis strain G1]
ATGTTTAGCTTTTTTAGCCGCAAAAAACAACAAGAAAATCAAGATACCACAACCGAAGAAAATCTGACCAGCGAAGAGTC
TGAAAAAAGTAGTACTGTTGATTCACAGGATACAACTGAACAGACAACGGCAAATAGCGAAGCCGAAGACAACCAATTAC
AGGCGCTAAAGAGCAGCGAAGCAAAAACGGATCAACCGCCAATTGAACCAGCCGTTGCTGAAGAATCGAGCCAAGATAAT
AGCGAAAAATCCGAAACCGAAGTTACCGTGGCTACCGAGCCTCAAGAGTCACCCGCTGCAGAGAAAAAAGCCGGCTTTTT
CACCCGCCTGAAACAAGGGCTTAGCAAAACACGACAGAACTTTACCGACAGTCTGGCCAACCTGGTTTTAGGTCGTAAAG
AAATTGATGACGACTTGCTTGATGACTTGGAAATGATTCTTCTCACCGCCGATGTCGGTGTTGAAGCGACCGATAGAATT
ATCCAGAATCTGACAGATCAGGTCTCACGTAAGGAATTGAAGGATCCGCAAGCGTTGATGGATTCTTTAAAACAGCAGCT
CGAATCGATTATCGAGCCGATGTCGGTGGCTTTGGATGTGGATGCTCATCTGGCAAAAAAGCCAGGACCGTTTGTGATTC
TAATGGTCGGTATCAACGGTGTCGGTAAAACCACCACCATCGGCAAACTGGCGAAAAAATTCCAGCTTGAGGGCAAATCG
GTAATGCTGGCAGCGGGTGATACTTTCCGCGCCGCCGCGGTTGAGCAATTGCAAACCTGGGGGGAACGCAATCAGGTTCC
AGTCATTGCACAAAAAACCGGTGCCGATTCGGCGGCAGTCATTTTCGATGCGATCCAGTCGGCTAAGGCTAAGGGTATCG
ATGTCTTGATCGCCGATACCGCAGGTCGCCTGCACACTCAGTCCAACCTGATGGAAGAGTTGAAAAAGGTCAAACGCGTG
ATGTCTAAAGTGGATGAAACCGCACCACACGAAGTTATGCTGGTGATTGATGCCGGCACAGGACAGAATGCATTGAACCA
AGCCAAACAATTCGGCGAAGCCGTTGATATCAGCGGTATTACCTTGACCAAATTGGATGGTACTGCAAAAGGTGGTATCG
TATATGCACTGGCTGAACAACAGCAGATTCCTATTCGCTATATCGGCGTAGGGGAATCGATTGACGATTTACGAGAGTTT
GATGCAAAAAGCTTTACTCAAGCCCTGTTCTCCCAAAGCGAATAG

Domains

Predicted by InterproScan.

• SRP54-type protein, helical bundle domain (SRP54_N) (122-187)

• SRP54-type protein, GTPase domain (SRP54) (210-410)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilA	Neisseria gonorrhoeae MS11	48.815	100	0.498