Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   LROSL1_RS00215 Genome accession   NZ_CP040586
Coordinates   10448..10990 (+) Length   180 a.a.
NCBI ID   WP_178913294.1    Uniprot ID   -
Organism   Furfurilactobacillus rossiae strain L1     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 5448..15990
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LROSL1_RS00200 (LROSL1_0006) gyrA 6682..9324 (+) 2643 WP_178913293.1 DNA gyrase subunit A -
  LROSL1_RS00205 (LROSL1_0007) - 9474..9803 (+) 330 WP_017262423.1 heavy metal-binding domain-containing protein -
  LROSL1_RS00210 (LROSL1_0008) rpsF 10112..10411 (+) 300 WP_017262422.1 30S ribosomal protein S6 -
  LROSL1_RS00215 (LROSL1_0009) ssb 10448..10990 (+) 543 WP_178913294.1 single-stranded DNA-binding protein Machinery gene
  LROSL1_RS00220 (LROSL1_0010) rpsR 11016..11258 (+) 243 WP_017262420.1 30S ribosomal protein S18 -
  LROSL1_RS00225 (LROSL1_0011) - 11445..13472 (+) 2028 WP_178913295.1 DHH family phosphoesterase -
  LROSL1_RS00230 (LROSL1_0012) rplI 13478..13930 (+) 453 WP_017262418.1 50S ribosomal protein L9 -
  LROSL1_RS00235 (LROSL1_0013) dnaB 14011..15393 (+) 1383 WP_017262417.1 replicative DNA helicase -

Sequence

Protein


Download         Length: 180 a.a.        Molecular weight: 19354.77 Da        Isoelectric Point: 4.5865

>NTDB_id=365440 LROSL1_RS00215 WP_178913294.1 10448..10990(+) (ssb) [Furfurilactobacillus rossiae strain L1]
MINRAVLTGRLTRDPEVRYTQSGAAVGSFTLAVDRQFTNQQGQREADFINCVIWRKSAENFANFTHKGSLVGIEGRIQTR
NYENQQGQRVYVTEVVVENFALLESRSQSDQRTSGNTNDNGGYNNNAPQSGSANPFGGTGNNGGNNAGNTAPSSQSSQAP
ADPFAGNGESIDISDDDLPF

Nucleotide


Download         Length: 543 bp        

>NTDB_id=365440 LROSL1_RS00215 WP_178913294.1 10448..10990(+) (ssb) [Furfurilactobacillus rossiae strain L1]
ATGATTAATCGCGCAGTTCTTACCGGACGCTTAACCCGTGACCCTGAAGTTCGTTACACACAATCAGGAGCAGCTGTTGG
TTCATTTACGTTGGCGGTGGACCGTCAGTTCACTAACCAACAGGGCCAACGAGAGGCTGATTTCATTAACTGTGTAATCT
GGCGTAAGTCAGCGGAAAACTTCGCTAACTTCACGCATAAGGGTTCACTAGTTGGCATCGAGGGCCGGATTCAAACCCGG
AACTACGAGAACCAACAGGGCCAGCGCGTTTACGTCACTGAAGTGGTCGTCGAAAACTTTGCCTTACTAGAATCCCGTTC
TCAATCTGATCAACGGACTTCTGGTAACACAAATGACAACGGCGGCTACAACAATAATGCTCCTCAATCAGGAAGCGCCA
ATCCGTTTGGCGGCACTGGCAACAATGGCGGGAACAATGCAGGTAATACTGCACCTTCCAGTCAATCAAGCCAGGCCCCT
GCCGATCCTTTCGCTGGTAACGGTGAAAGCATTGACATCTCGGATGACGACCTTCCATTCTAG

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-102)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Latilactobacillus sakei subsp. sakei 23K

65.385

100

0.661
  ssbA Bacillus subtilis subsp. subtilis str. 168

56.667

100

0.567

Multiple sequence alignment