Detailed information    

insolico Bioinformatically predicted

Overview

Name   recN   Type   Machinery gene
Locus tag   BV455_RS14960 Genome accession   NZ_CP040553
Coordinates   2906754..2908475 (+) Length   573 a.a.
NCBI ID   WP_042408507.1    Uniprot ID   A0A023DDV9
Organism   Saccharococcus caldoxylosilyticus strain ER4B     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2901754..2913475
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BV455_RS14935 (BV455_03030) - 2902145..2902378 (+) 234 WP_017435215.1 exodeoxyribonuclease VII small subunit -
  BV455_RS14940 (BV455_03031) - 2902391..2903275 (+) 885 WP_174407481.1 polyprenyl synthetase family protein -
  BV455_RS14945 (BV455_03032) dxs 2903488..2905380 (+) 1893 WP_042408512.1 1-deoxy-D-xylulose-5-phosphate synthase -
  BV455_RS14950 (BV455_03033) - 2905384..2906217 (+) 834 WP_042408509.1 TlyA family RNA methyltransferase -
  BV455_RS14955 (BV455_03034) ahrC 2906285..2906734 (+) 450 WP_017435219.1 transcriptional regulator AhrC/ArgR -
  BV455_RS14960 (BV455_03035) recN 2906754..2908475 (+) 1722 WP_042408507.1 DNA repair protein RecN Machinery gene
  BV455_RS14965 (BV455_03036) spoIVB 2908601..2909893 (+) 1293 WP_042408504.1 SpoIVB peptidase -
  BV455_RS14970 (BV455_03037) spo0A 2910200..2910979 (+) 780 WP_017435222.1 sporulation transcription factor Spo0A -
  BV455_RS14975 (BV455_03038) - 2911923..2912069 (-) 147 WP_070104534.1 YycC family protein -
  BV455_RS14980 (BV455_03039) - 2912173..2912901 (+) 729 WP_042408501.1 glycerophosphodiester phosphodiesterase -
  BV455_RS14985 (BV455_03040) - 2912912..2913160 (-) 249 WP_026078465.1 DUF2627 domain-containing protein -

Sequence

Protein


Download         Length: 573 a.a.        Molecular weight: 64876.49 Da        Isoelectric Point: 4.8542

>NTDB_id=365179 BV455_RS14960 WP_042408507.1 2906754..2908475(+) (recN) [Saccharococcus caldoxylosilyticus strain ER4B]
MLAELSIKNFAIIESLSISFEKGLTVLTGETGAGKSIIIDAIYLLIGGRGSAEFVRYGEEKAEIEGLFLLNDETHPCYGK
CAEVGIDISEGMVVLRREIFATGKSVCRVNGKLVTTAVLREIGSTLVDIHGQHEHQELMDPARHLPLLDEFGGAEIAEAL
AEYRSVYEKYEQLRKKLKKLNENEQQMAHRLDLLTFQLNEIQQANLQPNEDEQLMEEKVKIVNFQKIYEALKHSYEALSG
EQRGLDWIGLAMSHLDDVASIDPELKEVYETIANSYYLLEDIMYKLRDQLEQLEYDPYRLDLIESRLGEINQLKRKYGPT
IEEILQYAEKISEEIDTIRNREIHVDELQKELKSVTEDLLIEAKNVTNVRKKYAKMLIDRIHQELKDLYMEKTQFDIVFA
KREGPLDAPLLDGVPVKFHEDGVDVVEFYISTNVGEPLKPLAKIASGGELSRIMLALKSIFSKHQGVTSIIFDEVDTGVS
GRVAQAIAEKIYRISIDSQVLCISHLPQVAAMADTHLFIAKETDGTRTKTLVKALTEEEKVKEIGRMISGVEITELTKKH
AKELLELATKIKQ

Nucleotide


Download         Length: 1722 bp        

>NTDB_id=365179 BV455_RS14960 WP_042408507.1 2906754..2908475(+) (recN) [Saccharococcus caldoxylosilyticus strain ER4B]
TTGCTTGCGGAATTATCCATAAAAAATTTCGCCATTATCGAATCGCTGTCGATTTCGTTTGAGAAAGGGCTAACAGTATT
AACAGGGGAAACGGGAGCAGGAAAATCGATTATTATTGATGCCATTTATTTGCTGATTGGCGGCCGCGGTTCCGCAGAAT
TTGTCCGTTATGGAGAAGAAAAGGCGGAAATAGAGGGACTTTTTTTATTAAACGATGAAACTCATCCGTGTTATGGCAAA
TGCGCCGAAGTCGGCATCGATATTAGCGAGGGAATGGTCGTGCTACGCCGCGAAATTTTCGCGACCGGAAAAAGCGTATG
CCGCGTAAACGGAAAATTAGTAACGACAGCGGTATTGCGGGAGATTGGTTCGACGCTCGTTGATATTCACGGGCAGCATG
AACATCAAGAATTGATGGATCCGGCCCGGCATCTTCCGCTACTGGATGAATTCGGGGGAGCGGAAATTGCAGAAGCGCTT
GCCGAATACCGCTCGGTTTATGAGAAATATGAACAATTGCGGAAGAAGCTGAAAAAATTAAATGAAAATGAACAGCAAAT
GGCCCATCGACTTGATTTGTTGACGTTCCAGCTTAATGAAATTCAGCAGGCGAATTTGCAGCCAAATGAAGACGAACAAT
TGATGGAGGAAAAAGTAAAAATCGTTAATTTCCAAAAAATTTACGAAGCCTTGAAACATAGCTATGAAGCGCTGTCTGGC
GAGCAGCGCGGCCTCGATTGGATAGGGCTGGCGATGAGCCATTTAGACGATGTTGCTTCCATTGATCCGGAGCTAAAGGA
AGTGTATGAAACGATCGCCAATAGCTATTATTTATTAGAAGACATCATGTATAAATTGCGCGATCAACTTGAACAATTAG
AATATGATCCATACCGTCTCGACCTCATCGAAAGCCGCCTAGGCGAGATTAATCAATTAAAACGAAAATACGGCCCGACG
ATTGAAGAAATTTTGCAATACGCGGAAAAAATTAGCGAAGAAATTGATACGATTCGAAACCGGGAAATCCATGTTGATGA
GTTGCAGAAAGAACTAAAATCGGTGACGGAAGATTTATTAATTGAAGCAAAAAACGTAACCAATGTCCGCAAAAAATATG
CAAAAATGTTAATCGACCGTATCCATCAGGAACTAAAAGATCTATATATGGAAAAAACGCAGTTTGACATCGTATTTGCC
AAGCGGGAAGGGCCGCTCGATGCGCCGCTTTTGGACGGGGTGCCCGTCAAGTTCCATGAAGACGGCGTGGATGTGGTCGA
ATTTTATATTTCCACCAATGTCGGCGAACCACTTAAACCGCTTGCCAAAATTGCTTCCGGCGGTGAGCTGTCGCGCATCA
TGCTGGCGCTAAAAAGCATTTTCTCGAAACACCAGGGGGTTACATCGATCATTTTTGATGAAGTGGATACAGGCGTCAGC
GGCCGTGTGGCTCAAGCGATTGCCGAAAAGATTTACCGCATTTCCATCGATTCGCAAGTGCTCTGCATTTCCCACTTGCC
GCAAGTAGCAGCAATGGCAGATACGCATCTGTTTATCGCAAAAGAAACGGACGGAACCCGAACGAAAACGCTTGTGAAAG
CATTGACAGAGGAAGAAAAAGTAAAAGAAATTGGGCGGATGATTTCCGGTGTGGAAATTACGGAGCTGACAAAAAAACAT
GCAAAAGAATTGCTTGAGCTAGCAACAAAAATCAAACAATGA

Domains

Predicted by InterproScan.

RecF/RecN/SMC N terminal domain (SMC_N)

(1-526)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A023DDV9

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recN Bacillus subtilis subsp. subtilis str. 168

64.46

100

0.646

Multiple sequence alignment