Detailed information
Bioinformatically predicted
Overview
| Name | comGA | Type | Machinery gene |
| Locus tag | BV455_RS14330 | Genome accession | NZ_CP040553 |
| Coordinates | 2810941..2812005 (+) | Length | 354 a.a. |
| NCBI ID | WP_017435101.1 | Uniprot ID | A0A023DES3 |
| Organism | Saccharococcus caldoxylosilyticus strain ER4B | ||
| Function | dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology) DNA binding and uptake |
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Genomic Context
Location: 2805941..2817005
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| BV455_RS14305 (BV455_02898) | - | 2806872..2807048 (-) | 177 | WP_017435096.1 | DUF2759 domain-containing protein | - |
| BV455_RS14310 (BV455_02899) | - | 2807495..2808127 (+) | 633 | WP_017435097.1 | MBL fold metallo-hydrolase | - |
| BV455_RS14315 (BV455_02900) | - | 2808352..2809488 (+) | 1137 | WP_081160068.1 | class I SAM-dependent methyltransferase | - |
| BV455_RS14320 (BV455_02901) | - | 2809536..2809778 (-) | 243 | WP_017435099.1 | DUF2626 domain-containing protein | - |
| BV455_RS14325 (BV455_02902) | - | 2810044..2810739 (-) | 696 | WP_042406218.1 | helix-turn-helix transcriptional regulator | - |
| BV455_RS14330 (BV455_02903) | comGA | 2810941..2812005 (+) | 1065 | WP_017435101.1 | competence type IV pilus ATPase ComGA | Machinery gene |
| BV455_RS14335 (BV455_02904) | comGB | 2812002..2813033 (+) | 1032 | WP_218687286.1 | competence type IV pilus assembly protein ComGB | - |
| BV455_RS14340 (BV455_02905) | - | 2813102..2814631 (-) | 1530 | WP_218687287.1 | recombinase family protein | - |
| BV455_RS14345 (BV455_02906) | - | 2814675..2815106 (-) | 432 | WP_218687288.1 | ImmA/IrrE family metallo-endopeptidase | - |
| BV455_RS14350 (BV455_02907) | - | 2815129..2815563 (-) | 435 | WP_218687289.1 | helix-turn-helix domain-containing protein | - |
| BV455_RS14355 (BV455_02908) | - | 2815797..2816045 (+) | 249 | WP_218687290.1 | helix-turn-helix domain-containing protein | - |
| BV455_RS14360 (BV455_02909) | - | 2816084..2816281 (+) | 198 | WP_218687291.1 | hypothetical protein | - |
| BV455_RS14365 (BV455_02910) | - | 2816298..2816480 (+) | 183 | WP_218687292.1 | hypothetical protein | - |
Sequence
Protein
Download Length: 354 a.a. Molecular weight: 39699.41 Da Isoelectric Point: 8.4019
>NTDB_id=365178 BV455_RS14330 WP_017435101.1 2810941..2812005(+) (comGA) [Saccharococcus caldoxylosilyticus strain ER4B]
MNEIEYLADRLLMEAGLLRVSDIHIVPRKNDAVVRFRLDGLLMEKATLTKETCERLITHFKFLAGMDIGERRRPQSGAME
TNQQGEIISLRLSTLPTFYDESLVIRLLPQSFFLPQSQISLFAHSTNILLSLFQQPQGLIICTGPTGSGKTTTLYALLRI
CQEKWHRNVITLEDPVEKRIDNLLQVQINEKAGITYAVGLKAALRHDPDVIMVGEIRDAETAKIAVRSAMTGHLIVSTMH
TKNAVGAIYRLREFGIPLEDIEQTLLAVTAQRLVDLLCPFCGEHCMPVCRQYRKVRRVAVHELLYGSALSDAICSVQTGN
KVCRYYTLENIIRKGMALGFLPAHTLTVVKGGEK
MNEIEYLADRLLMEAGLLRVSDIHIVPRKNDAVVRFRLDGLLMEKATLTKETCERLITHFKFLAGMDIGERRRPQSGAME
TNQQGEIISLRLSTLPTFYDESLVIRLLPQSFFLPQSQISLFAHSTNILLSLFQQPQGLIICTGPTGSGKTTTLYALLRI
CQEKWHRNVITLEDPVEKRIDNLLQVQINEKAGITYAVGLKAALRHDPDVIMVGEIRDAETAKIAVRSAMTGHLIVSTMH
TKNAVGAIYRLREFGIPLEDIEQTLLAVTAQRLVDLLCPFCGEHCMPVCRQYRKVRRVAVHELLYGSALSDAICSVQTGN
KVCRYYTLENIIRKGMALGFLPAHTLTVVKGGEK
Nucleotide
Download Length: 1065 bp
>NTDB_id=365178 BV455_RS14330 WP_017435101.1 2810941..2812005(+) (comGA) [Saccharococcus caldoxylosilyticus strain ER4B]
ATGAATGAGATTGAATATTTGGCGGACCGTCTTCTCATGGAAGCAGGGTTGCTTCGCGTCTCGGATATTCATATCGTTCC
GCGGAAGAACGATGCGGTAGTGCGTTTTCGCTTAGATGGACTGCTGATGGAAAAAGCAACGCTGACAAAAGAAACATGCG
AGCGGCTTATTACCCATTTTAAATTTTTAGCAGGCATGGACATTGGCGAACGCCGTCGGCCGCAAAGCGGAGCAATGGAG
ACAAACCAGCAAGGGGAAATCATTTCTTTACGCCTTTCCACATTGCCGACATTCTACGATGAAAGCCTCGTCATCCGGCT
TCTTCCACAAAGTTTTTTCCTGCCACAGTCACAAATTTCCCTATTTGCCCACTCTACCAACATATTGCTTTCCCTGTTTC
AACAGCCGCAAGGATTAATCATTTGTACCGGACCGACCGGATCGGGAAAAACGACGACTTTATATGCCTTGCTGCGGATT
TGCCAGGAAAAGTGGCATCGCAATGTCATCACCTTGGAAGATCCGGTCGAAAAGCGGATTGACAATCTATTGCAAGTGCA
GATTAACGAAAAAGCGGGAATTACGTATGCGGTTGGCTTGAAAGCCGCGTTGCGCCATGATCCGGATGTTATTATGGTCG
GGGAAATCCGCGATGCCGAAACGGCAAAAATTGCGGTGCGCTCTGCCATGACAGGACATTTGATCGTTTCGACGATGCAT
ACGAAAAATGCGGTTGGCGCGATTTACCGTTTGCGCGAATTCGGCATTCCGCTCGAAGATATTGAGCAAACGTTGCTCGC
CGTAACGGCGCAGCGGCTTGTTGATTTGCTCTGTCCGTTTTGCGGTGAACATTGCATGCCCGTTTGCCGCCAATATCGAA
AAGTACGCCGCGTCGCTGTGCATGAACTGCTGTATGGAAGTGCATTATCCGACGCTATTTGCTCCGTGCAAACAGGGAAC
AAAGTATGCCGTTACTATACGTTGGAAAATATCATTCGCAAAGGGATGGCGCTTGGGTTTTTGCCGGCGCACACTCTCAC
GGTCGTTAAGGGAGGGGAAAAATGA
ATGAATGAGATTGAATATTTGGCGGACCGTCTTCTCATGGAAGCAGGGTTGCTTCGCGTCTCGGATATTCATATCGTTCC
GCGGAAGAACGATGCGGTAGTGCGTTTTCGCTTAGATGGACTGCTGATGGAAAAAGCAACGCTGACAAAAGAAACATGCG
AGCGGCTTATTACCCATTTTAAATTTTTAGCAGGCATGGACATTGGCGAACGCCGTCGGCCGCAAAGCGGAGCAATGGAG
ACAAACCAGCAAGGGGAAATCATTTCTTTACGCCTTTCCACATTGCCGACATTCTACGATGAAAGCCTCGTCATCCGGCT
TCTTCCACAAAGTTTTTTCCTGCCACAGTCACAAATTTCCCTATTTGCCCACTCTACCAACATATTGCTTTCCCTGTTTC
AACAGCCGCAAGGATTAATCATTTGTACCGGACCGACCGGATCGGGAAAAACGACGACTTTATATGCCTTGCTGCGGATT
TGCCAGGAAAAGTGGCATCGCAATGTCATCACCTTGGAAGATCCGGTCGAAAAGCGGATTGACAATCTATTGCAAGTGCA
GATTAACGAAAAAGCGGGAATTACGTATGCGGTTGGCTTGAAAGCCGCGTTGCGCCATGATCCGGATGTTATTATGGTCG
GGGAAATCCGCGATGCCGAAACGGCAAAAATTGCGGTGCGCTCTGCCATGACAGGACATTTGATCGTTTCGACGATGCAT
ACGAAAAATGCGGTTGGCGCGATTTACCGTTTGCGCGAATTCGGCATTCCGCTCGAAGATATTGAGCAAACGTTGCTCGC
CGTAACGGCGCAGCGGCTTGTTGATTTGCTCTGTCCGTTTTGCGGTGAACATTGCATGCCCGTTTGCCGCCAATATCGAA
AAGTACGCCGCGTCGCTGTGCATGAACTGCTGTATGGAAGTGCATTATCCGACGCTATTTGCTCCGTGCAAACAGGGAAC
AAAGTATGCCGTTACTATACGTTGGAAAATATCATTCGCAAAGGGATGGCGCTTGGGTTTTTGCCGGCGCACACTCTCAC
GGTCGTTAAGGGAGGGGAAAAATGA
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| comGA | Bacillus subtilis subsp. subtilis str. 168 |
54.971 |
96.61 |
0.531 |
| pilB | Glaesserella parasuis strain SC1401 |
43.729 |
83.333 |
0.364 |