Detailed information    

insolico Bioinformatically predicted

Overview

Name   lrpC   Type   Machinery gene
Locus tag   E3S82_RS09610 Genome accession   NZ_CP047845
Coordinates   1940920..1941297 (+) Length   125 a.a.
NCBI ID   WP_001621795.1    Uniprot ID   -
Organism   Staphylococcus aureus strain UP_591     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1935920..1946297
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  E3S82_RS13595 - 1938386..1938634 (+) 249 WP_229345124.1 site-specific DNA-methyltransferase -
  E3S82_RS13720 - 1938626..1938961 (-) 336 WP_374057280.1 transposase -
  E3S82_RS13600 - 1939349..1940479 (+) 1131 Protein_1863 IS3 family transposase -
  E3S82_RS09610 (E3S82_09610) lrpC 1940920..1941297 (+) 378 WP_001621795.1 Lrp/AsnC family transcriptional regulator Machinery gene
  E3S82_RS09615 (E3S82_09615) - 1941359..1941832 (+) 474 WP_000455984.1 GNAT family N-acetyltransferase -
  E3S82_RS09620 (E3S82_09620) - 1942074..1942631 (-) 558 WP_000633423.1 DUF4811 domain-containing protein -
  E3S82_RS09625 (E3S82_09625) - 1942633..1944150 (-) 1518 WP_000107171.1 MDR family MFS transporter -
  E3S82_RS09630 (E3S82_09630) - 1944298..1944870 (+) 573 WP_000540837.1 TetR/AcrR family transcriptional regulator -
  E3S82_RS09635 (E3S82_09635) - 1944931..1945917 (-) 987 WP_000662031.1 tRNA dihydrouridine synthase -

Sequence

Protein


Download         Length: 125 a.a.        Molecular weight: 14603.72 Da        Isoelectric Point: 4.7711

>NTDB_id=365178 E3S82_RS09610 WP_001621795.1 1940920..1941297(+) (lrpC) [Staphylococcus aureus strain UP_591]
MLNNSRITINELSKQVNLSAPAVRERVNKLEDQGIIKGYTINIDYKELGYDVEILIELTIKNNRYKDFKEFISKQDNVEF
CYRVSGEACFVFKVRLENMDEVETFVDTIQPYGQIKCQFIFSSVV

Nucleotide


Download         Length: 378 bp        

>NTDB_id=365178 E3S82_RS09610 WP_001621795.1 1940920..1941297(+) (lrpC) [Staphylococcus aureus strain UP_591]
TTGTTAAATAATAGTAGAATTACTATTAATGAATTAAGTAAACAAGTGAACTTATCTGCTCCAGCTGTAAGAGAAAGGGT
AAATAAACTTGAAGATCAAGGTATTATAAAAGGTTATACAATTAACATAGATTATAAGGAATTAGGTTACGATGTAGAAA
TATTAATTGAGTTAACTATAAAGAATAATAGATACAAAGATTTTAAAGAATTTATTTCAAAACAAGATAATGTTGAGTTT
TGTTATCGTGTATCAGGAGAGGCATGTTTTGTATTTAAGGTTCGGTTGGAAAATATGGATGAAGTAGAAACATTTGTTGA
TACCATACAGCCATATGGGCAGATAAAATGTCAGTTTATCTTTTCATCAGTTGTCTAA

Domains

Predicted by InterProScan.

Lrp/AsnC ligand binding domain (AsnC_trans_reg)

(56-121)

Winged helix-turn-helix DNA-binding (HTH_24)

(3-37)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  lrpC Bacillus subtilis subsp. subtilis str. 168

42.975

96.8

0.416

Multiple sequence alignment