Detailed information    

insolico Bioinformatically predicted

Overview

Name   comA   Type   Regulator
Locus tag   FC605_RS16120 Genome accession   NZ_CP040528
Coordinates   3103351..3103995 (-) Length   214 a.a.
NCBI ID   WP_080529735.1    Uniprot ID   -
Organism   Bacillus subtilis strain PR10     
Function   promoting transcription of comS (predicted from homology)   
Competence regulation

Genomic Context

Location: 3098351..3108995
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FC605_RS16085 (FC605_16085) mrpB 3099543..3099974 (+) 432 WP_003228819.1 Na(+)/H(+) antiporter subunit B -
  FC605_RS16090 (FC605_16090) mrpC 3099974..3100315 (+) 342 WP_003220730.1 Na(+)/H(+) antiporter subunit C -
  FC605_RS16095 (FC605_16095) mrpD 3100308..3101789 (+) 1482 WP_080529734.1 Na+/H+ antiporter subunit D -
  FC605_RS16100 (FC605_16100) mrpE 3101795..3102271 (+) 477 WP_003228815.1 Na+/H+ antiporter subunit E -
  FC605_RS16105 (FC605_16105) mrpF 3102271..3102555 (+) 285 WP_003228814.1 Na(+)/H(+) antiporter subunit F1 -
  FC605_RS16110 (FC605_16110) mnhG 3102539..3102913 (+) 375 WP_003244302.1 monovalent cation/H(+) antiporter subunit G -
  FC605_RS16115 (FC605_16115) yuxO 3102952..3103332 (-) 381 WP_017695528.1 hotdog fold thioesterase -
  FC605_RS16120 (FC605_16120) comA 3103351..3103995 (-) 645 WP_080529735.1 two-component system response regulator ComA Regulator
  FC605_RS16125 (FC605_16125) comP 3104076..3106337 (-) 2262 WP_080529736.1 histidine kinase Regulator
  FC605_RS16130 (FC605_16130) comX 3106353..3106574 (-) 222 WP_014480704.1 competence pheromone ComX -
  FC605_RS16135 (FC605_16135) - 3106576..3107439 (-) 864 WP_080529737.1 polyprenyl synthetase family protein -
  FC605_RS16140 (FC605_16140) degQ 3107624..3107764 (-) 141 WP_003220708.1 degradation enzyme regulation protein DegQ Regulator
  FC605_RS16145 (FC605_16145) - 3107986..3108111 (+) 126 WP_003228793.1 hypothetical protein -
  FC605_RS16150 (FC605_16150) - 3108226..3108594 (+) 369 WP_014477834.1 hypothetical protein -

Sequence

Protein


Download         Length: 214 a.a.        Molecular weight: 24158.53 Da        Isoelectric Point: 4.6857

>NTDB_id=365039 FC605_RS16120 WP_080529735.1 3103351..3103995(-) (comA) [Bacillus subtilis strain PR10]
MKKILVIDDHPAVMEGTKTILETDSNLSVDCLSPEPSEQFIKQHDFSSYDLILMDLNLGGEVNGMELSKQILQENPHCKI
IVYTGYEVEDYFEEAIRAGLHGAISKTESKEKITQYIYHVLNGEILVDFTYFKQLMTQQKTKPAPSSQKEQDVLTPRECL
ILQEVEKGFTNQEIADALHLSKRSIEYSLTSIFNKLNVGSRTEAVLIAKSDGVL

Nucleotide


Download         Length: 645 bp        

>NTDB_id=365039 FC605_RS16120 WP_080529735.1 3103351..3103995(-) (comA) [Bacillus subtilis strain PR10]
ATGAAAAAGATACTAGTGATTGATGACCATCCGGCTGTCATGGAAGGCACCAAGACAATTTTGGAAACGGATTCGAATTT
GTCTGTTGATTGTCTCAGTCCTGAACCGAGCGAACAGTTTATCAAGCAGCATGATTTCTCGTCATATGATCTCATTTTAA
TGGATCTGAATCTAGGCGGCGAGGTCAATGGGATGGAGCTTTCTAAACAGATTTTACAAGAGAATCCTCATTGTAAAATT
ATCGTGTATACCGGTTATGAGGTCGAGGATTATTTCGAGGAAGCGATTCGTGCGGGTCTGCACGGTGCCATCAGCAAAAC
GGAATCTAAAGAAAAGATCACCCAATACATATACCACGTACTCAACGGAGAAATTTTAGTCGATTTTACTTACTTTAAAC
AGCTGATGACTCAGCAAAAAACAAAGCCGGCTCCTTCCTCTCAAAAAGAACAAGATGTGCTCACACCTAGAGAATGCCTG
ATTCTTCAAGAAGTTGAAAAGGGATTTACAAACCAAGAAATCGCAGATGCCCTTCATTTAAGCAAGCGGTCCATTGAATA
CAGCTTGACATCGATTTTCAATAAGCTGAATGTCGGTTCACGGACGGAAGCGGTTTTGATTGCGAAATCAGACGGTGTAC
TTTAA

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, luxR family (GerE)

(152-208)

Response regulator receiver domain (Response_reg)

(4-117)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comA Bacillus subtilis subsp. subtilis str. 168

99.533

100

0.995

Multiple sequence alignment