Detailed information
Bioinformatically predicted
Overview
| Name | ssb | Type | Machinery gene |
| Locus tag | SLGD_RS04500 | Genome accession | NC_013893 |
| Coordinates | 984927..985328 (+) | Length | 133 a.a. |
| NCBI ID | WP_002461219.1 | Uniprot ID | A0A853V538 |
| Organism | Staphylococcus lugdunensis HKU09-01 | ||
| Function | ssDNA binding (predicted from homology) DNA processing |
||
Genomic Context
Location: 979927..990328
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| SLGD_RS04475 (SLGD_00921) | - | 981211..981612 (+) | 402 | WP_002461226.1 | F0F1 ATP synthase subunit epsilon | - |
| SLGD_RS04480 (SLGD_00922) | - | 981750..981983 (+) | 234 | WP_002478965.1 | DUF1146 family protein | - |
| SLGD_RS04485 (SLGD_00923) | murA | 982147..983412 (+) | 1266 | WP_002461223.1 | UDP-N-acetylglucosamine 1-carboxyvinyltransferase | - |
| SLGD_RS04490 (SLGD_00924) | fabZ | 983449..983889 (+) | 441 | WP_002461222.1 | 3-hydroxyacyl-ACP dehydratase FabZ | - |
| SLGD_RS04495 (SLGD_00925) | - | 984286..984738 (-) | 453 | WP_002478966.1 | YwpF-like family protein | - |
| SLGD_RS04500 (SLGD_00926) | ssb | 984927..985328 (+) | 402 | WP_002461219.1 | single-stranded DNA-binding protein | Machinery gene |
| SLGD_RS04505 (SLGD_00927) | - | 985807..986514 (+) | 708 | WP_002478967.1 | transglycosylase family protein | - |
| SLGD_RS04510 (SLGD_00928) | tenA | 986927..987604 (+) | 678 | WP_002461217.1 | thiaminase II | - |
| SLGD_RS04515 (SLGD_00929) | thiD | 987609..988430 (+) | 822 | WP_002478968.1 | bifunctional hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase | - |
| SLGD_RS04520 (SLGD_00930) | thiM | 988423..989211 (+) | 789 | WP_002478969.1 | hydroxyethylthiazole kinase | - |
| SLGD_RS04525 (SLGD_00931) | thiE | 989214..989852 (+) | 639 | WP_002478970.1 | thiamine phosphate synthase | - |
Sequence
Protein
Download Length: 133 a.a. Molecular weight: 15388.56 Da Isoelectric Point: 6.7151
>NTDB_id=36492 SLGD_RS04500 WP_002461219.1 984927..985328(+) (ssb) [Staphylococcus lugdunensis HKU09-01]
MLNKIVIVGRLTKDAQIYEKEEVKIATFCVATERNYKDDNNEQIVDYILCKAYGRTATNIEKYTSQGSLVGITGQMRSRK
YTKDQQTHFVTELYVETIKFMSSKGKTHEILEEHPTTNIQPFSVDEMKLLNIE
MLNKIVIVGRLTKDAQIYEKEEVKIATFCVATERNYKDDNNEQIVDYILCKAYGRTATNIEKYTSQGSLVGITGQMRSRK
YTKDQQTHFVTELYVETIKFMSSKGKTHEILEEHPTTNIQPFSVDEMKLLNIE
Nucleotide
Download Length: 402 bp
>NTDB_id=36492 SLGD_RS04500 WP_002461219.1 984927..985328(+) (ssb) [Staphylococcus lugdunensis HKU09-01]
ATGTTAAATAAAATCGTAATCGTTGGACGATTAACTAAAGATGCCCAAATATACGAGAAAGAGGAGGTTAAAATTGCTAC
ATTTTGTGTGGCTACGGAAAGAAATTATAAAGATGATAACAACGAGCAAATCGTAGATTATATTCTATGTAAAGCATATG
GTAGGACTGCTACCAACATTGAAAAGTATACCAGTCAGGGATCATTGGTTGGTATTACAGGTCAAATGCGCTCAAGAAAG
TATACTAAAGACCAACAAACACATTTTGTTACAGAATTATACGTAGAAACTATTAAATTCATGTCCTCTAAAGGCAAAAC
ACACGAAATCCTCGAAGAACATCCAACTACTAATATTCAACCTTTTTCAGTTGATGAAATGAAACTCTTAAATATCGAAT
AA
ATGTTAAATAAAATCGTAATCGTTGGACGATTAACTAAAGATGCCCAAATATACGAGAAAGAGGAGGTTAAAATTGCTAC
ATTTTGTGTGGCTACGGAAAGAAATTATAAAGATGATAACAACGAGCAAATCGTAGATTATATTCTATGTAAAGCATATG
GTAGGACTGCTACCAACATTGAAAAGTATACCAGTCAGGGATCATTGGTTGGTATTACAGGTCAAATGCGCTCAAGAAAG
TATACTAAAGACCAACAAACACATTTTGTTACAGAATTATACGTAGAAACTATTAAATTCATGTCCTCTAAAGGCAAAAC
ACACGAAATCCTCGAAGAACATCCAACTACTAATATTCAACCTTTTTCAGTTGATGAAATGAAACTCTTAAATATCGAAT
AA
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| ssb | Staphylococcus aureus N315 |
69.697 |
99.248 |
0.692 |
| ssb | Staphylococcus aureus MW2 |
68.939 |
99.248 |
0.684 |