Detailed information    

insolico Bioinformatically predicted

Overview

Name   comFA   Type   Machinery gene
Locus tag   BPGQ101_RS17300 Genome accession   NZ_CP040514
Coordinates   3307551..3308930 (-) Length   459 a.a.
NCBI ID   WP_138279275.1    Uniprot ID   -
Organism   Bacillus altitudinis strain GQYP101     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3302551..3313930
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BPGQ101_RS17265 (BPGQ101_17265) flgL 3302734..3303645 (-) 912 WP_008348257.1 flagellar hook-associated protein FlgL -
  BPGQ101_RS17270 (BPGQ101_17270) flgK 3303654..3305174 (-) 1521 WP_024719239.1 flagellar hook-associated protein FlgK -
  BPGQ101_RS17275 (BPGQ101_17275) - 3305190..3305672 (-) 483 WP_007499977.1 flagellar protein FlgN -
  BPGQ101_RS17280 (BPGQ101_17280) flgM 3305691..3305954 (-) 264 WP_003213252.1 flagellar biosynthesis anti-sigma factor FlgM -
  BPGQ101_RS17285 (BPGQ101_17285) - 3306034..3306453 (-) 420 WP_017357864.1 TIGR03826 family flagellar region protein -
  BPGQ101_RS17290 (BPGQ101_17290) comFC 3306510..3307196 (-) 687 WP_208755857.1 ComF family protein Machinery gene
  BPGQ101_RS17295 (BPGQ101_17295) - 3307193..3307486 (-) 294 WP_035701582.1 late competence development ComFB family protein -
  BPGQ101_RS17300 (BPGQ101_17300) comFA 3307551..3308930 (-) 1380 WP_138279275.1 DEAD/DEAH box helicase Machinery gene
  BPGQ101_RS17305 (BPGQ101_17305) - 3309049..3309891 (-) 843 WP_024719242.1 DegV family protein -
  BPGQ101_RS17310 (BPGQ101_17310) degU 3310103..3310792 (-) 690 WP_008348273.1 two-component system response regulator DegU Regulator
  BPGQ101_RS17315 (BPGQ101_17315) degS 3310857..3312032 (-) 1176 WP_024719243.1 sensor histidine kinase Regulator
  BPGQ101_RS17320 (BPGQ101_17320) - 3312254..3312922 (+) 669 WP_017357860.1 YigZ family protein -

Sequence

Protein


Download         Length: 459 a.a.        Molecular weight: 52489.15 Da        Isoelectric Point: 9.9663

>NTDB_id=364840 BPGQ101_RS17300 WP_138279275.1 3307551..3308930(-) (comFA) [Bacillus altitudinis strain GQYP101]
MNLEKAMELSHKLQSRHLLPIECQCTQSELEWLENQGFIHRTPAVDRVASGLICCRCGVSNKRYFALSPCETCKKDCVYC
RSCIMLGKVSECGFLYEWTGPQKKETRRVELTWQGELSKGQKRASDRLVEAIQNKFDLLVWAVCGAGKTEVLFHGIKYAL
NNGMSVCIATPRTDVVLELEPRMRKAFQGLNIAALYGGSSQRFQMAPLMIATTHQLMRYKNAFDVLIVDEVDAFPYSMDE
RLQFAVLKSMKKTGVRIYLSATPSKKMQKDVARGQLEAIKIPLRFHQKPLPVPTFQWVGDWKKKLKRNRLPASTMNWMHE
HITKKKRVLLFVPSISTMKKVTHILQVQDVNVQGVSADDQERKQKVQHFRDHRYDVLVTTTILERGVTIQDVQVGVLGAE
SPIFTESALVQISGRAGRHPDFFNGDVYFFHFGLTRSMKQAKKHIVKMNNTAEKEFSEK

Nucleotide


Download         Length: 1380 bp        

>NTDB_id=364840 BPGQ101_RS17300 WP_138279275.1 3307551..3308930(-) (comFA) [Bacillus altitudinis strain GQYP101]
TTGAATCTGGAAAAAGCAATGGAACTCAGTCACAAGCTACAATCAAGGCACCTCCTTCCTATTGAATGTCAATGTACACA
GTCCGAATTGGAGTGGCTGGAGAATCAAGGATTCATCCATAGAACACCTGCTGTCGATAGGGTGGCGAGTGGTTTGATCT
GCTGCCGATGCGGTGTATCAAACAAGCGCTACTTTGCCCTCTCTCCGTGTGAAACATGTAAAAAAGACTGTGTATACTGT
AGATCCTGCATCATGCTGGGAAAAGTAAGCGAATGTGGCTTTCTCTACGAATGGACGGGTCCACAAAAGAAAGAAACAAG
ACGAGTTGAATTAACATGGCAGGGAGAGCTTTCTAAAGGGCAAAAGAGAGCGTCCGATAGGCTAGTAGAAGCAATCCAAA
ACAAATTTGATCTGCTCGTTTGGGCTGTTTGTGGTGCGGGGAAAACGGAGGTGCTTTTTCACGGAATAAAATATGCGTTA
AATAACGGAATGAGTGTTTGTATTGCGACGCCTAGAACCGATGTTGTACTTGAGCTTGAACCTCGAATGAGAAAGGCATT
TCAAGGACTGAATATAGCTGCACTTTATGGCGGGAGTTCTCAAAGATTTCAAATGGCGCCGCTTATGATCGCTACAACCC
ATCAGCTAATGAGATATAAAAACGCTTTTGATGTCCTCATTGTAGACGAAGTCGATGCTTTTCCTTATTCAATGGATGAA
CGGCTTCAGTTTGCTGTTTTAAAGTCAATGAAAAAAACAGGAGTTAGAATTTACTTAAGTGCCACACCATCTAAAAAAAT
GCAAAAGGATGTTGCTCGTGGACAATTAGAAGCGATCAAAATTCCTCTGCGCTTCCACCAAAAACCGTTGCCTGTCCCAA
CATTTCAATGGGTTGGAGATTGGAAAAAGAAATTAAAAAGAAATCGGCTTCCAGCATCTACAATGAACTGGATGCATGAA
CATATCACAAAGAAAAAAAGAGTGTTACTCTTTGTTCCTTCTATTTCTACTATGAAGAAGGTAACTCATATTCTTCAAGT
TCAAGATGTAAATGTACAGGGTGTTTCTGCGGATGATCAAGAAAGGAAGCAAAAAGTCCAGCATTTCAGAGATCATAGAT
ACGATGTATTGGTTACAACAACTATTCTAGAAAGAGGCGTTACTATTCAAGATGTTCAAGTGGGCGTATTAGGTGCGGAA
TCTCCTATTTTTACAGAAAGTGCACTTGTCCAAATTTCTGGTAGAGCAGGGAGACATCCAGATTTTTTTAACGGAGACGT
GTACTTTTTTCATTTTGGTTTAACGAGAAGTATGAAACAAGCAAAGAAACATATCGTAAAAATGAATAATACAGCTGAAA
AAGAGTTTTCTGAAAAATAG

Domains

Predicted by InterproScan.

Type III restriction enzyme, res subunit (ResIII)

(116-264)

Helicase conserved C-terminal domain (Helicase_C)

(322-419)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comFA Bacillus subtilis subsp. subtilis str. 168

52.349

97.386

0.51

Multiple sequence alignment