Detailed information    

insolico Bioinformatically predicted

Overview

Name   recF   Type   Machinery gene
Locus tag   E3T01_RS09735 Genome accession   NZ_CP047826
Coordinates   1990503..1991615 (-) Length   370 a.a.
NCBI ID   WP_000775115.1    Uniprot ID   -
Organism   Staphylococcus aureus strain UP_1239     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1985503..1996615
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  E3T01_RS09725 (E3T01_09725) gyrA 1985868..1988522 (-) 2655 WP_000819082.1 DNA gyrase subunit A -
  E3T01_RS09730 (E3T01_09730) gyrB 1988559..1990493 (-) 1935 WP_000255578.1 DNA topoisomerase (ATP-hydrolyzing) subunit B -
  E3T01_RS09735 (E3T01_09735) recF 1990503..1991615 (-) 1113 WP_000775115.1 DNA replication/repair protein RecF Machinery gene
  E3T01_RS09740 (E3T01_09740) yaaA 1991612..1991857 (-) 246 WP_001789359.1 S4 domain-containing protein YaaA -
  E3T01_RS09745 (E3T01_09745) dnaN 1992238..1993371 (-) 1134 WP_000969811.1 DNA polymerase III subunit beta -
  E3T01_RS09750 (E3T01_09750) dnaA 1993649..1995010 (-) 1362 WP_001290433.1 chromosomal replication initiator protein DnaA -
  E3T01_RS09755 (E3T01_09755) rpmH 1995741..1995878 (+) 138 WP_000240855.1 50S ribosomal protein L34 -
  E3T01_RS09760 (E3T01_09760) rnpA 1995999..1996352 (+) 354 WP_001789343.1 ribonuclease P protein component -

Sequence

Protein


Download         Length: 370 a.a.        Molecular weight: 42401.40 Da        Isoelectric Point: 6.4362

>NTDB_id=364375 E3T01_RS09735 WP_000775115.1 1990503..1991615(-) (recF) [Staphylococcus aureus strain UP_1239]
MKLNTLQLENYRNYDEVTLKCHPDVNILIGENAQGKTNLLESIYTLALAKSHRTSNDKELIRFNADYAKIEGELSYRHGT
MPLTMFITKKGKQVKVNHLEQSRLTQYIGHLNVVLFAPEDLNIVKGSPQIRRRFIDMELGQISAVYLNDLAQYQRILKQK
NNYLKQLQLGQKKDLTMLEVLNQQFAEYAMKVTDKRAHFIQELESLAKPIHAGITNDKEALSLNYLPSLKFDYAQNEAAR
LEEIMSILSDNMQREKERGISLFGPHRDDISFDVNGMDAQTYGSQGQQRTTALSIKLAEIELMNIEVGEYPVLLLDDVLS
ELDDSRQTHLLSTIQHKVQTFVTTTSVDGIDHEIMNNAKLYRINQGEIIK

Nucleotide


Download         Length: 1113 bp        

>NTDB_id=364375 E3T01_RS09735 WP_000775115.1 1990503..1991615(-) (recF) [Staphylococcus aureus strain UP_1239]
ATGAAGTTAAATACACTCCAATTAGAAAATTATCGTAACTATGATGAGGTTACGTTGAAATGTCATCCTGACGTGAATAT
CCTCATTGGAGAAAATGCACAAGGAAAGACAAATTTACTTGAATCAATTTATACCTTAGCTTTAGCAAAAAGTCATAGAA
CGAGTAATGATAAGGAACTCATACGTTTTAATGCTGATTATGCTAAAATAGAAGGTGAGCTTAGTTATAGACACGGCACG
ATGCCATTAACAATGTTTATAACTAAAAAAGGTAAACAAGTCAAAGTGAATCACTTAGAGCAAAGTCGTCTAACTCAATA
TATTGGACACCTTAATGTGGTTCTATTTGCGCCAGAAGATTTGAATATTGTAAAAGGCTCTCCTCAAATAAGACGACGCT
TTATAGATATGGAGTTGGGCCAAATTTCTGCTGTTTACTTAAATGATTTAGCTCAATACCAACGTATTTTAAAGCAAAAG
AATAATTACTTAAAGCAGTTACAATTAGGCCAAAAAAAGGACTTAACAATGTTGGAAGTATTAAATCAGCAGTTTGCTGA
ATATGCAATGAAAGTAACTGATAAACGTGCACATTTTATTCAAGAGCTAGAGTCGTTAGCTAAACCGATTCATGCTGGTA
TCACAAATGATAAAGAAGCGTTGTCGCTGAATTATTTACCTAGTCTTAAATTTGATTATGCTCAAAATGAAGCGGCACGA
CTTGAAGAAATTATGTCTATTCTTAGCGATAATATGCAAAGAGAAAAAGAACGAGGCATTAGCTTATTCGGACCACATCG
AGATGATATAAGTTTTGATGTGAATGGCATGGATGCTCAAACATATGGTTCTCAAGGACAGCAACGTACAACGGCTTTGT
CCATTAAATTAGCTGAAATTGAGTTAATGAATATCGAAGTTGGGGAATATCCCGTCTTATTATTAGATGATGTACTCAGT
GAATTAGATGATTCGCGTCAAACGCATTTATTAAGTACGATTCAGCATAAAGTACAAACATTTGTCACTACGACATCTGT
AGATGGTATTGATCATGAAATCATGAATAACGCTAAATTGTATCGTATTAATCAAGGTGAAATTATAAAGTAA

Domains

Predicted by InterProScan.

RecF/RecN/SMC N terminal domain (SMC_N)

(3-347)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recF Bacillus subtilis subsp. subtilis str. 168

58.378

100

0.584
  recF Streptococcus pneumoniae R6

49.062

100

0.495

Multiple sequence alignment