Detailed information    

insolico Bioinformatically predicted

Overview

Name   epdJ   Type   Machinery gene
Locus tag   MFS40622_RS06995 Genome accession   NC_013887
Coordinates   1373090..1373989 (+) Length   299 a.a.
NCBI ID   WP_012980981.1    Uniprot ID   -
Organism   Methanocaldococcus sp. FS406-22     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1368090..1378989
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MFS40622_RS06975 (MFS40622_1393) - 1368549..1368794 (+) 246 WP_012980977.1 Gar1/Naf1 family protein -
  MFS40622_RS06980 (MFS40622_1394) - 1368812..1369816 (+) 1005 WP_012980978.1 transcription initiation factor IIB -
  MFS40622_RS06985 (MFS40622_1395) - 1369922..1372018 (+) 2097 WP_012980979.1 ATPase, T2SS/T4P/T4SS family -
  MFS40622_RS06990 (MFS40622_1396) - 1372055..1373071 (+) 1017 WP_012980980.1 type II secretion system F family protein -
  MFS40622_RS06995 (MFS40622_1397) epdJ 1373090..1373989 (+) 900 WP_012980981.1 type II secretion system F family protein Machinery gene
  MFS40622_RS07000 (MFS40622_1398) - 1373995..1374504 (-) 510 WP_012980982.1 TIGR00295 family protein -
  MFS40622_RS07005 (MFS40622_1399) tfe 1374533..1375090 (-) 558 WP_012980983.1 transcription factor E -
  MFS40622_RS07010 (MFS40622_1400) - 1375056..1376156 (-) 1101 WP_012980984.1 ATP-grasp domain-containing protein -
  MFS40622_RS07015 (MFS40622_1401) mptA 1376258..1377196 (-) 939 WP_048197504.1 GTP cyclohydrolase MptA -
  MFS40622_RS07020 (MFS40622_1402) - 1377180..1378409 (-) 1230 WP_012980986.1 ArsR family transcriptional regulator -

Sequence

Protein


Download         Length: 299 a.a.        Molecular weight: 33227.27 Da        Isoelectric Point: 9.9580

>NTDB_id=36406 MFS40622_RS06995 WP_012980981.1 1373090..1373989(+) (epdJ) [Methanocaldococcus sp. FS406-22]
MPKYLTTLYKRTIKRNVILFKKLGKEFDEKKFVLLLIIIAAIPILISYYLNLTLKSMIIFVVIYVGAALFIPSILYENKI
ETLENNIPQALYIMILALESGRSINEALLEVVKSNIKEVSDIFRKVLYLMENQKLSFEESMTIVSNLYDSKVLRMLARIM
IENRKYGGDLADSLKILAKTLEDFKMYKKQLLSVTASGLAIGFIILCGVIPAVAALLGAYLIAVSGMLSGVAPIPPVKPE
DISKRLEIVQMGTAIIGALFAIPIFGLKIGRMFVISAITMTVGVLAYYTILKIAPGLFS

Nucleotide


Download         Length: 900 bp        

>NTDB_id=36406 MFS40622_RS06995 WP_012980981.1 1373090..1373989(+) (epdJ) [Methanocaldococcus sp. FS406-22]
ATGCCCAAATACTTAACAACCCTATATAAAAGAACTATAAAAAGGAATGTCATACTCTTTAAAAAACTTGGTAAGGAGTT
TGATGAAAAAAAGTTTGTATTGTTGTTAATTATTATAGCTGCGATACCAATTCTAATATCTTATTATCTAAACCTAACCT
TGAAAAGTATGATTATATTCGTAGTTATATATGTGGGAGCTGCATTGTTCATCCCCTCTATTTTATACGAAAATAAAATA
GAAACTCTTGAAAATAACATTCCACAAGCTCTTTATATTATGATATTAGCCCTCGAATCTGGAAGGTCCATAAACGAAGC
ATTACTTGAAGTTGTTAAAAGCAATATAAAAGAAGTTAGTGATATATTTAGAAAAGTTCTATATCTAATGGAAAATCAAA
AATTAAGTTTTGAAGAGTCTATGACAATTGTGTCTAATTTATATGACTCTAAAGTATTAAGGATGTTAGCAAGAATTATG
ATTGAAAATAGGAAATACGGTGGAGATTTGGCAGATTCTCTAAAAATATTGGCTAAAACTCTTGAAGACTTTAAAATGTA
TAAAAAGCAGTTGTTAAGTGTTACAGCAAGTGGTTTAGCTATTGGTTTTATTATATTGTGTGGGGTCATTCCAGCTGTTG
CTGCACTGTTGGGAGCTTATTTAATAGCTGTTTCAGGTATGTTAAGTGGTGTTGCTCCAATACCTCCAGTTAAACCAGAA
GACATATCAAAAAGATTAGAGATTGTTCAAATGGGAACGGCAATTATAGGAGCTTTGTTTGCAATTCCAATATTTGGGTT
AAAAATAGGGAGGATGTTTGTAATTTCTGCTATAACCATGACAGTTGGAGTTTTAGCATATTATACAATCTTAAAAATTG
CTCCAGGGTTATTTTCATAA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(93-217)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  epdJ Methanococcus maripaludis strain DSM 2067

48.322

99.666

0.482

Multiple sequence alignment